X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=coverage.h;h=8d6fead9aa33a25cb0fa9b3e1a98a01c61b18722;hb=1a968f34ae2d2680eaf189a197d1a21b8dfd6c03;hp=b4dccf73e65d57f77b1f94c271340ba40a4d62fd;hpb=66f474db0824eebab0cebd53992728a0e5c789ca;p=mothur.git

diff --git a/coverage.h b/coverage.h
index b4dccf7..8d6fead 100644
--- a/coverage.h
+++ b/coverage.h
@@ -5,36 +5,28 @@
  *  coverage.h
  *  Mothur
  *
- *  Created by Sarah Westcott on 3/9/09.
- *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
+ *  Created by Pat Schloss on 4/22/09.
+ *  Copyright 2009 Patrick D. Schloss. All rights reserved.
  *
  */
 
-#include "mothur.h"
-#include "fullmatrix.h"
-#include "globaldata.hpp"
+#include "calculator.h"
 
-using namespace std;
+/* This class implements the coverage estimator on single group. 
+ It is a child of the calculator class. */
 
 /***********************************************************************/
 
-class Coverage  {
+class Coverage : public Calculator  {
 	
-	public: 
-		Coverage();
-		~Coverage(){};
-		void getValues(FullMatrix*, vector< vector< vector<float> > >&, vector<float>, string);	//matrix, container for results, vector of distances, mode - for random matrices
-		void getValues(FullMatrix*, vector< vector< vector<float> > >&, vector<float>); //for user matrix
-		
-	private:
-		GlobalData* globaldata;
-		int numGroups, numUserGroups;
-
+public: 
+	Coverage() : Calculator("coverage", 1, false) {};
+	EstOutput getValues(SAbundVector*);	
+	EstOutput getValues(vector<SharedRAbundVector*>) {return data;};
+	string getCitation() { return "http://www.mothur.org/wiki/Coverage"; }
 };
 
 
 /***********************************************************************/
 
-
-
-#endif
\ No newline at end of file
+#endif