X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=coverage.h;h=7b89c1e6f07d420a0e8a1737fc21154d44a411ce;hb=a5af3313f0221a8b41aa362d72eadb60a4dd6e27;hp=7e6430019551b7db843ba178815eb5fbfeef5ae8;hpb=2d2fbc80f9359b19873ba3e63970b58f4f8f49f3;p=mothur.git

diff --git a/coverage.h b/coverage.h
index 7e64300..7b89c1e 100644
--- a/coverage.h
+++ b/coverage.h
@@ -5,36 +5,27 @@
  *  coverage.h
  *  Mothur
  *
- *  Created by Sarah Westcott on 3/9/09.
- *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
+ *  Created by Pat Schloss on 4/22/09.
+ *  Copyright 2009 Patrick D. Schloss. All rights reserved.
  *
  */
 
-#include "mothur.h"
-#include "fullmatrix.h"
-#include "globaldata.hpp"
+#include "calculator.h"
 
-using namespace std;
+/* This class implements the coverage estimator on single group. 
+ It is a child of the calculator class. */
 
 /***********************************************************************/
 
-class Coverage  {
+class Coverage : public Calculator  {
 	
-	public: 
-		Coverage();
-		~Coverage(){};
-		void getValues(FullMatrix*, float, vector< vector<float> >&);
-		void getValues(FullMatrix*, float, vector< vector<float> >&, string);	//for random matrices
-		
-	private:
-		GlobalData* globaldata;
-		int numGroups, numUserGroups;
-
+public: 
+	Coverage() : Calculator("coverage", 1, false) {};
+	EstOutput getValues(SAbundVector*);	
+	EstOutput getValues(vector<SharedRAbundVector*>) {return data;};
 };
 
 
 /***********************************************************************/
 
-
-
-#endif
\ No newline at end of file
+#endif