X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=counttable.cpp;fp=counttable.cpp;h=cd623ecbcf5fbea1cdd25fa8c9c2b872746da162;hb=ea4f373c28543cd1002b0dd7dc6e55c526647d59;hp=bc9d4da05966b6b3fc3ec5fe0e751c21be7f180f;hpb=159fd324dfecacb6617669246d85c787ae67f630;p=mothur.git

diff --git a/counttable.cpp b/counttable.cpp
index bc9d4da..cd623ec 100644
--- a/counttable.cpp
+++ b/counttable.cpp
@@ -661,6 +661,22 @@ vector<string> CountTable::getNamesOfSeqs() {
 	}
 }
 /************************************************************/
+//returns the names of all unique sequences in file mapped to their seqCounts
+map<string, int> CountTable::getNameMap() {
+    try {
+        map<string, int> names;
+        for (map<string, int>::iterator it = indexNameMap.begin(); it != indexNameMap.end(); it++) {
+            names[it->first] = totals[it->second];
+        }
+        
+        return names;
+    }
+	catch(exception& e) {
+		m->errorOut(e, "CountTable", "getNameMap");
+		exit(1);
+	}
+}
+/************************************************************/
 //returns the names of all unique sequences in file
 vector<string> CountTable::getNamesOfSeqs(string group) {
     try {