X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=countseqscommand.h;h=555d6a74fa36fa034b6d0aafeb5f07bd0c4e7bbc;hb=96dbe925073caefaed6e6db85659c144a806aeb1;hp=54982c11939e82fae8de341f74c1aa3a01e4f609;hpb=49d2b7459c5027557564b21e9487dadafbbbdc96;p=mothur.git

diff --git a/countseqscommand.h b/countseqscommand.h
index 54982c1..555d6a7 100644
--- a/countseqscommand.h
+++ b/countseqscommand.h
@@ -34,8 +34,14 @@ public:
 	
 private:
 	string namefile, groupfile, outputDir, groups;
-	bool abort;
-	vector<string> Groups;
+	bool abort, large;
+	vector<string> Groups, outputNames;
+    
+    int processSmall(string);
+    int processLarge(string);
+    map<int, string> processNameFile(string);
+    map<int, string> getGroupNames(string, set<string>&);
+    
 };
 
 #endif