X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=countseqscommand.cpp;h=a7890b878a7f1210137e683e4a1311a02439eb49;hb=f2408a11ad53c148e3a3329018ca7d04b567f11d;hp=a9bffc6eca25d3ad78ce7b01d96e196ba6308bfb;hpb=3faf1dbcf0c09b07d69bd8541240c43b42bbb2d2;p=mothur.git

diff --git a/countseqscommand.cpp b/countseqscommand.cpp
index a9bffc6..a7890b8 100644
--- a/countseqscommand.cpp
+++ b/countseqscommand.cpp
@@ -147,9 +147,9 @@ int CountSeqsCommand::execute(){
 		if (abort == true) { if (calledHelp) { return 0; }  return 2;	}
 		
 		ofstream out;
-		string outputFileName = outputDir + m->getRootName(m->getSimpleName(namefile)) + ".seq.count";
+		string outputFileName = outputDir + m->getRootName(m->getSimpleName(namefile)) + "seq.count";
 		m->openOutputFile(outputFileName, out); outputTypes["summary"].push_back(outputFileName);
-		out << "Representative Sequence\t total\t";
+		out << "Representative_Sequence\ttotal\t";
 		
 		GroupMap* groupMap;
 		if (groupfile != "") {