X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=countgroupscommand.h;h=1ab83c86ea98cb5a9bdd5c43e31558cbe4971307;hb=4542a79d20176ff0ee830b0f9d4f4c92637439d9;hp=dd0e0a23eb3ccb9a5f4072aa9bb076228f2fb8b2;hpb=49d2b7459c5027557564b21e9487dadafbbbdc96;p=mothur.git

diff --git a/countgroupscommand.h b/countgroupscommand.h
index dd0e0a2..1ab83c8 100644
--- a/countgroupscommand.h
+++ b/countgroupscommand.h
@@ -23,8 +23,8 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "count.groups";			}
 	string getCommandCategory()		{ return "Sequence Processing";		}
-	string getOutputFileNameTag(string, string) { return ""; }
 	string getHelpString();	
+    string getOutputPattern(string){ return ""; }	
 	string getCitation() { return "http://www.mothur.org/wiki/Count.groups"; }
 	string getDescription()		{ return "counts the number of sequences in each group"; }
 	
@@ -33,7 +33,7 @@ public:
 	
 	
 private:
-	string sharedfile, groupfile, outputDir, groups, accnosfile;
+	string sharedfile, groupfile, countfile, outputDir, groups, accnosfile;
 	bool abort;
 	vector<string> Groups;
 };