X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=countgroupscommand.h;fp=countgroupscommand.h;h=0000000000000000000000000000000000000000;hb=4a877efa127e56e81a21f53cfdbbfd3bfbe8c4ff;hp=2532a80eca171fefd776e3722474084e42a1f396;hpb=a6cf29fa4dac0909c7582cb1094151d34093ee76;p=mothur.git

diff --git a/countgroupscommand.h b/countgroupscommand.h
deleted file mode 100644
index 2532a80..0000000
--- a/countgroupscommand.h
+++ /dev/null
@@ -1,42 +0,0 @@
-#ifndef COUNTGROUPSCOMMAND_H
-#define COUNTGROUPSCOMMAND_H
-
-/*
- *  countgroupscommand.h
- *  Mothur
- *
- *  Created by westcott on 8/9/11.
- *  Copyright 2011 Schloss Lab. All rights reserved.
- *
- */
-
-#include "command.hpp"
-
-class CountGroupsCommand : public Command {
-	
-public:
-	
-	CountGroupsCommand(string);
-	CountGroupsCommand();	
-	~CountGroupsCommand(){}
-	
-	vector<string> setParameters();
-	string getCommandName()			{ return "count.groups";			}
-	string getCommandCategory()		{ return "Sequence Processing";		}
-	string getHelpString();	
-	string getCitation() { return "http://www.mothur.org/wiki/Count.groups"; }
-	string getDescription()		{ return "counts the number of sequences in each group"; }
-	
-	int execute(); 
-	void help() { m->mothurOut(getHelpString()); }	
-	
-	
-private:
-	string sharedfile, groupfile, outputDir, groups, accnosfile;
-	bool abort;
-	vector<string> Groups;
-	
-	void readAccnos();
-};
-
-#endif