X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=countgroupscommand.cpp;h=ce3358ef43b9cee9d7887314fb0378cb203b7ebe;hb=250e3b11b1c9c1e1ad458ab6c7e71ac2e67e11d9;hp=6da077485c5fcd7641d759ceb6820dc9652033a7;hpb=eb71e28b7b7afd82540f4a8f0bac9429c5b9d713;p=mothur.git

diff --git a/countgroupscommand.cpp b/countgroupscommand.cpp
index 6da0774..ce3358e 100644
--- a/countgroupscommand.cpp
+++ b/countgroupscommand.cpp
@@ -261,7 +261,7 @@ int CountGroupsCommand::execute(){
             m->openOutputFile(outputFileName, out);
             
 			CountTable ct;
-			ct.readTable(countfile);
+			ct.readTable(countfile, true, false);
             
 			//make sure groups are valid
 			//takes care of user setting groupNames that are invalid or setting groups=all