X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=corraxescommand.h;h=a91a24019c46b1b8d7346fd87e5a45ea957242a9;hb=3914b0d6480f67df53b1e838f51c4e6155710434;hp=5f04c6a754393bda843abdf057e0f47763fd21cf;hpb=ca9ac1d80c62f57270b0dcd49410ebe08a8aecd6;p=mothur.git

diff --git a/corraxescommand.h b/corraxescommand.h
index 5f04c6a..a91a240 100644
--- a/corraxescommand.h
+++ b/corraxescommand.h
@@ -24,7 +24,11 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "corr.axes";				}
 	string getCommandCategory()		{ return "Hypothesis Testing";		}
+	
 	string getHelpString();	
+    string getOutputPattern(string);	
+	string getCitation() { return "McCune B, Grace JB, Urban DL (2002). Analysis of ecological communities. MjM Software Design: Gleneden Beach, OR. \nLegendre P, Legendre L (1998). Numerical Ecology. Elsevier: New York. \nhttp://www.mothur.org/wiki/Corr.axes"; }
+	string getDescription()		{ return "calculate the correlation coefficient for each column in a shared/relabund file to the axes displayed in a pcoa file"; }
 	
 	int execute();
 	void help() { m->mothurOut(getHelpString()); }