X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=corraxescommand.cpp;h=f47427d62c2cc7f03615149b11cbfdee5135b083;hb=4169642e8a8d45f71a4a7241ee02f1b1aae29520;hp=4f8dccb167fc8e8e6d08597f11504d4df2b26f24;hpb=5553e33be3a45eee6bed2ac9a5c4ca0aa0e8d5e4;p=mothur.git

diff --git a/corraxescommand.cpp b/corraxescommand.cpp
index 4f8dccb..f47427d 100644
--- a/corraxescommand.cpp
+++ b/corraxescommand.cpp
@@ -645,7 +645,7 @@ int CorrAxesCommand::calcKendall(map<string, vector<float> >& axes, ofstream& ou
 					int numWithLowerRank = 0;
 					float thisrank = otus[l].score;
 					
-					for (int u = l; u < scores[j].size(); u++) {
+					for (int u = l+1; u < scores[j].size(); u++) {
 						if (otus[u].score > thisrank) { numWithHigherRank++; }
 						else if (otus[u].score < thisrank) { numWithLowerRank++; }
 						count++;
@@ -655,9 +655,6 @@ int CorrAxesCommand::calcKendall(map<string, vector<float> >& axes, ofstream& ou
 					numDisCoor += numWithLowerRank;
 				}
 				
-				//comparing to yourself
-				count -= lookupFloat.size();
-				
 				double p = (numCoor - numDisCoor) / (float) count;
 
 				out << '\t' << p;