X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=cooccurrencecommand.h;h=758a9fff0c155261c1efbe60e7a0992d9b215681;hb=1a968f34ae2d2680eaf189a197d1a21b8dfd6c03;hp=08209190f3f51b0e334706530afed253684eb75e;hpb=5c5c0428f6d548c28a8b903ac80efed4f92d59db;p=mothur.git

diff --git a/cooccurrencecommand.h b/cooccurrencecommand.h
index 0820919..758a9ff 100644
--- a/cooccurrencecommand.h
+++ b/cooccurrencecommand.h
@@ -28,8 +28,9 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "Cooccurrence";			}
 	string getCommandCategory()		{ return "Hypothesis Testing";	}
-	string getOutputFileNameTag(string, string);
+	
 	string getHelpString();	
+    string getOutputPattern(string);	
 	string getCitation() { return "Ulrich W & Gotelli NJ (2010).  Null model analysis of species associations using abundance data.  Ecology  91:3384.\nhttp://www.mothur.org/wiki/Cooccurrence"; }
 	string getDescription()		{ return "calculates four metrics and tests their significance to assess whether presence-absence patterns are different than what one would expect by chance."; }