X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=cooccurrencecommand.h;h=08209190f3f51b0e334706530afed253684eb75e;hb=006601d68abe8d0061f77e8d28323b160750e343;hp=8f60e08330ced9099c8b3b777e618a94ca2f9ed1;hpb=fc3b1fc4fc1c4e38fde6b0c0ee7896b5fe0b9d57;p=mothur.git

diff --git a/cooccurrencecommand.h b/cooccurrencecommand.h
index 8f60e08..0820919 100644
--- a/cooccurrencecommand.h
+++ b/cooccurrencecommand.h
@@ -28,8 +28,9 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "Cooccurrence";			}
 	string getCommandCategory()		{ return "Hypothesis Testing";	}
+	string getOutputFileNameTag(string, string);
 	string getHelpString();	
-	string getCitation() { return "http://www.mothur.org/wiki/Cooccurrence"; }
+	string getCitation() { return "Ulrich W & Gotelli NJ (2010).  Null model analysis of species associations using abundance data.  Ecology  91:3384.\nhttp://www.mothur.org/wiki/Cooccurrence"; }
 	string getDescription()		{ return "calculates four metrics and tests their significance to assess whether presence-absence patterns are different than what one would expect by chance."; }
 	
 	int execute();