X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=consensusseqscommand.h;h=fd2f4f535dfa3ca7b4be2c99b2e323a2d4d0b49c;hb=4de093e3b92bdab1579565cb2873553412f6671e;hp=226b4c959bf25f9c0629a556755641809401baa4;hpb=f06fdb807822f8e06db003ed809c87250905cfc8;p=mothur.git

diff --git a/consensusseqscommand.h b/consensusseqscommand.h
index 226b4c9..fd2f4f5 100644
--- a/consensusseqscommand.h
+++ b/consensusseqscommand.h
@@ -38,12 +38,13 @@ private:
 	map<string, string> fastaMap;
 	map<string, string> nameMap;
 	map<string, string> nameFileMap;
+	int cutoff;
 	
 	int readFasta();
 	int readNames();
 	int processList(ListVector*&);
 	string getConsSeq(string, ofstream&, string&, int);
-	char getBase(vector<int>);
+	char getBase(vector<int>, int);
 };
 
 #endif