X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=consensuscommand.h;h=a9878517db3b6a1e1bc86d057f1ce5d6a2554b82;hb=2bb9267aa4b4ecdf8488b06605cc9f3f36fa4332;hp=7a7960708c9b5d17d69355caaf8cfd8be089e76d;hpb=aa9238c0a9e6e7aa0ed8b8b606b08ad4fd7dcfe3;p=mothur.git

diff --git a/consensuscommand.h b/consensuscommand.h
index 7a79607..a987851 100644
--- a/consensuscommand.h
+++ b/consensuscommand.h
@@ -13,19 +13,26 @@
 #include "tree.h"
 #include "treemap.h"
 #include "sharedutilities.h"
-	
-class GlobalData;
 
 class ConcensusCommand : public Command {
 	
 public:
 	ConcensusCommand(string);	
-	~ConcensusCommand();
-	int execute();
-	void help();	
+	ConcensusCommand();
+	~ConcensusCommand() {}
+	
+	vector<string> setParameters();
+	string getCommandName()			{ return "consensus";	}
+	string getCommandCategory()		{ return "Hidden";		}
+	string getHelpString();	
+	string getCitation() { return "no citation"; }
+	string getDescription()		{ return "consensus"; }
+
+	int execute(); 
+	void help() { m->mothurOut(getHelpString()); }	
+	
 	
 private:
-	GlobalData* globaldata;
 	SharedUtil* util;
 	vector<Tree*> t;
 	Tree* consensusTree;
@@ -43,6 +50,7 @@ private:
 	string outputFile, notIncluded, filename;
 	ofstream out, out2;
 	int numNodes, numLeaves, count;  //count is the next available spot in the tree vector
+	vector<string> outputNames;
 									 	
 	int getSets();
 	int getSubgroupRating(vector<string>);