X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=completelinkage.cpp;fp=completelinkage.cpp;h=86e90547f494ef0883705f640521cb82cf6dbb8f;hb=0caf3fbabaa3ece404f8ce77f4c883dc5b1bf1dc;hp=0000000000000000000000000000000000000000;hpb=1b73ff67c83892a025e597dabd9df6fe7b58206a;p=mothur.git

diff --git a/completelinkage.cpp b/completelinkage.cpp
new file mode 100644
index 0000000..86e9054
--- /dev/null
+++ b/completelinkage.cpp
@@ -0,0 +1,34 @@
+
+#include "cluster.hpp"
+
+/***********************************************************************/
+
+CompleteLinkage::CompleteLinkage(RAbundVector* rav, ListVector* lv, SparseMatrix* dm, float c, string s) :
+	Cluster(rav, lv, dm, c, s)
+{}
+
+/***********************************************************************/
+//This function returns the tag of the method.
+string CompleteLinkage::getTag() {
+	return("fn");
+}
+
+
+/***********************************************************************/
+//This function updates the distance based on the furthest neighbor method.
+bool CompleteLinkage::updateDistance(MatData& colCell, MatData& rowCell) {
+	try {
+		bool changed = false;
+		if (colCell->dist < rowCell->dist) {
+			colCell->dist = rowCell->dist;
+			changed = true;
+		}	
+		return(changed);
+	}
+	catch(exception& e) {
+		m->errorOut(e, "CompleteLinkage", "updateDistance");
+		exit(1);
+	}
+}
+
+/***********************************************************************/