X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=commandoptionparser.cpp;fp=commandoptionparser.cpp;h=0000000000000000000000000000000000000000;hb=4a877efa127e56e81a21f53cfdbbfd3bfbe8c4ff;hp=dfad533c8898ff3d79067d5f16c6869803e21e12;hpb=a6cf29fa4dac0909c7582cb1094151d34093ee76;p=mothur.git

diff --git a/commandoptionparser.cpp b/commandoptionparser.cpp
deleted file mode 100644
index dfad533..0000000
--- a/commandoptionparser.cpp
+++ /dev/null
@@ -1,50 +0,0 @@
-/*
- *  commandoptionparser.cpp
- *  
- *
- *  Created by Pat Schloss on 10/23/08.
- *  Copyright 2008 Patrick D. Schloss. All rights reserved.
- *
- */
-
-
-#include "commandoptionparser.hpp"
-
-
-//**********************************************************************************************************************
-//This Function parses through the command line and pulls out the command then sends the options to  the parseGlobalData
-CommandOptionParser::CommandOptionParser(string input){
-	try {
-		m = MothurOut::getInstance();
-		
-		int openParen = input.find_first_of('(');
-		int closeParen = input.find_last_of(')');
-		optionString = "";
-		commandString = "";
-
-		if(openParen != -1 && closeParen != -1){	
-            //gobble extra spaces
-            int spot = 0;
-            for (int i = 0; i < input.length(); i++) {  if (!(isspace(input[i]))) { spot = i; break; } }
-            if (spot > openParen) { spot = 0; }
-			commandString = input.substr(spot, openParen-spot);   //commandString contains everything before "("
-			optionString = input.substr((openParen+1), (closeParen-openParen-1)); //optionString contains everything between "(" and ")".
-		}
-		else if (openParen == -1) { m->mothurOut("[ERROR]: You are missing ("); m->mothurOutEndLine(); }
-		else if (closeParen == -1) { m->mothurOut("[ERROR]:You are missing )"); m->mothurOutEndLine(); }
-    }
-	catch(exception& e) {
-		m->errorOut(e, "CommandOptionParser", "CommandOptionParser");
-		exit(1);
-	}
-}
-
-//**********************************************************************************************************************
-
-string CommandOptionParser::getCommandString()	{	return commandString;	}
-
-//**********************************************************************************************************************
-
-string CommandOptionParser::getOptionString()	{	return optionString;	}
-
-//**********************************************************************************************************************