X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=commandfactory.hpp;h=e95db8016a4149c9c2defdbb9e7933ff6ee3905a;hb=f06b339c5fc4b6d1b9d2a08fe16bf7670bf7aeb4;hp=8b08c006312240676e1e1466a0470c7f3aa11eae;hpb=48335c6b6ecee614c30d22751c2880953c20e2f4;p=mothur.git

diff --git a/commandfactory.hpp b/commandfactory.hpp
index 8b08c00..e95db80 100644
--- a/commandfactory.hpp
+++ b/commandfactory.hpp
@@ -33,7 +33,8 @@ public:
 	bool getAppend()						{	return append;			}
 	string getOutputDir()					{	return outputDir;		}
 	bool MPIEnabled(string);
-
+	map<string, string> getListCommands()	{	return commands;		}
+	
 private:
 	Command* command;
 	Command* shellcommand;
@@ -47,6 +48,8 @@ private:
 	string outputDir, inputDir, logFileName;
 	bool append;
 	
+    int checkForRedirects(string);
+    
 	static CommandFactory* _uniqueInstance;
 	CommandFactory( const CommandFactory& ); // Disable copy constructor
 	void operator=( const CommandFactory& ); // Disable assignment operator