X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=commandfactory.hpp;h=6f96e90b4813e961222c60f9bb7390188d19c3e5;hb=17a6a53298a907c005fa93fb82af9e533adcda09;hp=d84be62a074dde5dc29b8006a636bd7b67b9607d;hpb=315e38cf393c82be238da5b32574f225a020d25c;p=mothur.git

diff --git a/commandfactory.hpp b/commandfactory.hpp
index d84be62..6f96e90 100644
--- a/commandfactory.hpp
+++ b/commandfactory.hpp
@@ -11,6 +11,7 @@
  */
 
 #include "mothur.h"
+#include "mothurout.h";
 
 class Command;
 
@@ -24,9 +25,11 @@ public:
 	void setOutputDirectory(string o)	{	outputDir = o;		}
 	void setInputDirectory(string i)	{	inputDir = i;		}
 	string getOutputDir()				{	return outputDir;	}
+	bool MPIEnabled(string);
 
 private:
 	Command* command;
+	MothurOut* m;
 	map<string, string> commands;
 	map<string, string>::iterator it;
 	string outputDir, inputDir;