X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=commandfactory.hpp;h=44e78fd66fa290d9664d773f470249f0600a2836;hb=84f93a9e670eb7f7e69e0468b9be4c53890c07f2;hp=3b6a17e38b2abb74b152da573a9bf2f1666e62e6;hpb=a688f253166590ee0b256f02e02f47c9cae44fd1;p=mothur.git

diff --git a/commandfactory.hpp b/commandfactory.hpp
index 3b6a17e..44e78fd 100644
--- a/commandfactory.hpp
+++ b/commandfactory.hpp
@@ -22,9 +22,12 @@ public:
 	Command* getCommand();
 	bool isValidCommand(string);
 	void printCommands(ostream&);
-	void setOutputDirectory(string o)	{	outputDir = o;		}
-	void setInputDirectory(string i)	{	inputDir = i;		}
-	string getOutputDir()			{	return outputDir;		}
+	void setOutputDirectory(string o)		{	outputDir = o;		}
+	void setInputDirectory(string i)		{	inputDir = i;		}
+	void setLogfileName(string n, bool a)	{	logFileName = n;  append = a;		}
+	string getLogfileName()					{	return logFileName; 	}
+	bool getAppend()						{	return append;			}
+	string getOutputDir()					{	return outputDir;		}
 	bool MPIEnabled(string);
 
 private:
@@ -32,7 +35,8 @@ private:
 	MothurOut* m;
 	map<string, string> commands;
 	map<string, string>::iterator it;
-	string outputDir, inputDir;
+	string outputDir, inputDir, logFileName;
+	bool append;
 	
 	static CommandFactory* _uniqueInstance;
 	CommandFactory( const CommandFactory& ); // Disable copy constructor