X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=commandfactory.hpp;h=36e8f462b146fc7846ee6cf9ead1eb42e9757a36;hb=3914b0d6480f67df53b1e838f51c4e6155710434;hp=3c19e87cdde276b42aeb7488243de568812ffbca;hpb=1d898dc6edaf9e9f287fab53bf1f21fb29757a17;p=mothur.git

diff --git a/commandfactory.hpp b/commandfactory.hpp
index 3c19e87..36e8f46 100644
--- a/commandfactory.hpp
+++ b/commandfactory.hpp
@@ -26,6 +26,7 @@ public:
 	bool isValidCommand(string);
 	bool isValidCommand(string, string);
 	void printCommands(ostream&);
+    void printCommandsCategories(ostream&);
 	void setOutputDirectory(string o)		{	outputDir = o;	m->setOutputDir(o);	}
 	void setInputDirectory(string i)		{	inputDir = i;		}
 	void setLogfileName(string n, bool a)	{	logFileName = n;  append = a;		}
@@ -48,6 +49,8 @@ private:
 	string outputDir, inputDir, logFileName;
 	bool append;
 	
+    int checkForRedirects(string);
+    
 	static CommandFactory* _uniqueInstance;
 	CommandFactory( const CommandFactory& ); // Disable copy constructor
 	void operator=( const CommandFactory& ); // Disable assignment operator