X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=commandfactory.hpp;fp=commandfactory.hpp;h=d84be62a074dde5dc29b8006a636bd7b67b9607d;hb=315e38cf393c82be238da5b32574f225a020d25c;hp=70e263078eee32ad8e706816f15be03a2fb6d369;hpb=c99f3846e7a7b6f06ab46508baa5409204ad6290;p=mothur.git

diff --git a/commandfactory.hpp b/commandfactory.hpp
index 70e2630..d84be62 100644
--- a/commandfactory.hpp
+++ b/commandfactory.hpp
@@ -21,11 +21,15 @@ public:
 	Command* getCommand();
 	bool isValidCommand(string);
 	void printCommands(ostream&);
+	void setOutputDirectory(string o)	{	outputDir = o;		}
+	void setInputDirectory(string i)	{	inputDir = i;		}
+	string getOutputDir()				{	return outputDir;	}
 
 private:
 	Command* command;
 	map<string, string> commands;
 	map<string, string>::iterator it;
+	string outputDir, inputDir;
 	
 	static CommandFactory* _uniqueInstance;
 	CommandFactory( const CommandFactory& ); // Disable copy constructor