X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=commandfactory.hpp;fp=commandfactory.hpp;h=8b08c006312240676e1e1466a0470c7f3aa11eae;hb=48335c6b6ecee614c30d22751c2880953c20e2f4;hp=a6dc5b72e0b403df37dd77b7ee593ca5ff19de73;hpb=a4f05f09c250323132a4b9427f41a3ededaec634;p=mothur.git

diff --git a/commandfactory.hpp b/commandfactory.hpp
index a6dc5b7..8b08c00 100644
--- a/commandfactory.hpp
+++ b/commandfactory.hpp
@@ -12,6 +12,7 @@
 
 #include "mothur.h"
 #include "mothurout.h"
+#include "currentfile.h"
 
 class Command;
 
@@ -37,7 +38,10 @@ private:
 	Command* command;
 	Command* shellcommand;
 	Command* pipecommand;
+	
 	MothurOut* m;
+	CurrentFile* currentFile;
+	
 	map<string, string> commands;
 	map<string, string>::iterator it;
 	string outputDir, inputDir, logFileName;