X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=commandfactory.cpp;h=f358797f7d94bf557c8bf986dd16faaed03743f3;hb=cfe70bbc94980a0177af465d3464db754673bd56;hp=9917b3cce2c2b4a48ac89ae4ab8a387921d1d74e;hpb=b1bcc272003b50a8c06dc9120754da1f5b744598;p=mothur.git

diff --git a/commandfactory.cpp b/commandfactory.cpp
index 9917b3c..f358797 100644
--- a/commandfactory.cpp
+++ b/commandfactory.cpp
@@ -76,6 +76,8 @@
 #include "makegroupcommand.h"
 #include "chopseqscommand.h"
 #include "clearcutcommand.h"
+#include "catchallcommand.h"
+#include "splitabundcommand.h"
 
 /*******************************************************/
 
@@ -159,6 +161,8 @@ CommandFactory::CommandFactory(){
 	commands["make.group"]			= "make.group";
 	commands["chop.seqs"]			= "chop.seqs";
 	commands["clearcut"]			= "clearcut";
+	commands["catchall"]			= "catchall";
+	commands["split.abund"]			= "split.abund";
 	commands["classify.seqs"]		= "MPIEnabled"; 
 	commands["dist.seqs"]			= "MPIEnabled";
 	commands["filter.seqs"]			= "MPIEnabled";
@@ -279,6 +283,8 @@ Command* CommandFactory::getCommand(string commandName, string optionString){
 		else if(commandName == "make.group")			{	command = new MakeGroupCommand(optionString);				}
 		else if(commandName == "chop.seqs")				{	command = new ChopSeqsCommand(optionString);				}
 		else if(commandName == "clearcut")				{	command = new ClearcutCommand(optionString);				}
+		else if(commandName == "catchall")				{	command = new CatchAllCommand(optionString);				}
+		else if(commandName == "split.abund")			{	command = new SplitAbundCommand(optionString);				}
 		else											{	command = new NoCommand(optionString);						}
 
 		return command;