X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=commandfactory.cpp;h=d81045e500d71b138efe15ba4b178395d17f7ba4;hb=eb4bb52af987ff4df7354d95d60cd763aec537e1;hp=56cca07fd19266820a29e3f529f784581ae00d80;hpb=c67cf4168e1a124088b6f017946f0aa1fbdf1301;p=mothur.git

diff --git a/commandfactory.cpp b/commandfactory.cpp
index 56cca07..d81045e 100644
--- a/commandfactory.cpp
+++ b/commandfactory.cpp
@@ -36,8 +36,6 @@
 #include "binsequencecommand.h"
 #include "getoturepcommand.h"
 #include "treegroupscommand.h"
-#include "bootstrapsharedcommand.h"
-//#include "consensuscommand.h"
 #include "distancecommand.h"
 #include "aligncommand.h"
 #include "matrixoutputcommand.h"
@@ -48,7 +46,6 @@
 #include "reversecommand.h"
 #include "trimseqscommand.h"
 #include "mergefilecommand.h"
-#include "chimeraseqscommand.h"
 #include "listseqscommand.h"
 #include "getseqscommand.h"
 #include "removeseqscommand.h"
@@ -70,6 +67,7 @@
 #include "chimeraslayercommand.h"
 #include "chimerapintailcommand.h"
 #include "chimerabellerophoncommand.h"
+#include "chimerauchimecommand.h"
 #include "setlogfilecommand.h"
 #include "phylodiversitycommand.h"
 #include "makegroupcommand.h"
@@ -113,6 +111,25 @@
 #include "homovacommand.h"
 #include "mantelcommand.h"
 #include "makefastqcommand.h"
+#include "anosimcommand.h"
+#include "getcurrentcommand.h"
+#include "setcurrentcommand.h"
+#include "sharedcommand.h"
+#include "getcommandinfocommand.h"
+#include "deuniquetreecommand.h"
+#include "countseqscommand.h"
+#include "countgroupscommand.h"
+#include "clearmemorycommand.h"
+#include "summarytaxcommand.h"
+#include "chimeraperseuscommand.h"
+#include "shhhseqscommand.h"
+#include "summaryqualcommand.h"
+#include "otuassociationcommand.h"
+#include "sortseqscommand.h"
+#include "classifytreecommand.h"
+#include "cooccurrencecommand.h"
+#include "pcrseqscommand.h"
+#include "createdatabasecommand.h"
 
 /*******************************************************/
 
@@ -148,6 +165,7 @@ CommandFactory::CommandFactory(){
 	commands["read.dist"]			= "read.dist"; 
 	commands["read.otu"]			= "read.otu";
 	commands["read.tree"]			= "read.tree"; 
+	commands["make.shared"]			= "make.shared"; 
 	commands["bin.seqs"]			= "bin.seqs"; 
 	commands["get.oturep"]			= "get.oturep";
 	commands["cluster"]				= "cluster"; 
@@ -171,15 +189,13 @@ CommandFactory::CommandFactory(){
 	commands["get.label"]           = "get.label";
 	commands["get.sabund"]          = "get.sabund";
 	commands["get.rabund"]          = "get.rabund";
-	commands["bootstrap.shared"]	= "bootstrap.shared";
-	//commands["consensus"]			= "consensus";
 	commands["help"]				= "help";
 	commands["reverse.seqs"]		= "reverse.seqs";
 	commands["trim.seqs"]			= "trim.seqs";
 	commands["trim.flows"]			= "trim.flows";
 	commands["list.seqs"]			= "list.seqs";
 	commands["get.seqs"]			= "get.seqs";
-	commands["remove.seqs"]			= "get.seqs";
+	commands["remove.seqs"]			= "remove.seqs";
 	commands["system"]				= "system";
 	commands["align.check"]			= "align.check";
 	commands["get.sharedseqs"]		= "get.sharedseqs";
@@ -190,7 +206,7 @@ CommandFactory::CommandFactory(){
 	commands["pre.cluster"]			= "pre.cluster";
 	commands["pcoa"]				= "pcoa";
 	commands["otu.hierarchy"]		= "otu.hierarchy";
-	commands["set.dir"]				= "set.dir";
+	commands["set.dir"]				= "MPIEnabled";
 	commands["merge.files"]			= "merge.files";
 	commands["parse.list"]			= "parse.list";
 	commands["set.logfile"]			= "set.logfile";
@@ -227,26 +243,44 @@ CommandFactory::CommandFactory(){
 	commands["amova"]				= "amova";
 	commands["homova"]				= "homova";
 	commands["mantel"]				= "mantel";
+	commands["anosim"]				= "anosim";
 	commands["make.fastq"]			= "make.fastq";
 	commands["merge.groups"]		= "merge.groups";
+	commands["get.current"]			= "MPIEnabled";
+	commands["set.current"]			= "MPIEnabled";
+	commands["get.commandinfo"]		= "get.commandinfo";
+	commands["deunique.tree"]		= "deunique.tree";
+	commands["count.seqs"]			= "count.seqs";
+	commands["count.groups"]		= "count.groups";
+	commands["clear.memory"]		= "clear.memory";
 	commands["pairwise.seqs"]		= "MPIEnabled";
 	commands["pipeline.pds"]		= "MPIEnabled";
 	commands["classify.seqs"]		= "MPIEnabled"; 
 	commands["dist.seqs"]			= "MPIEnabled";
 	commands["filter.seqs"]			= "MPIEnabled";
 	commands["align.seqs"]			= "MPIEnabled";
-	commands["chimera.seqs"]		= "chimera.seqs";
 	commands["chimera.ccode"]		= "MPIEnabled";
 	commands["chimera.check"]		= "MPIEnabled";
 	commands["chimera.slayer"]		= "MPIEnabled";
+	commands["chimera.uchime"]		= "chimera.uchime";
+	commands["chimera.perseus"]		= "chimera.perseus";
 	commands["chimera.pintail"]		= "MPIEnabled";
 	commands["chimera.bellerophon"]	= "MPIEnabled";
 	commands["screen.seqs"]			= "MPIEnabled";
 	commands["summary.seqs"]		= "MPIEnabled";
 	commands["cluster.split"]		= "MPIEnabled";
-	commands["shhh.seqs"]			= "MPIEnabled";
+	commands["shhh.flows"]			= "MPIEnabled";
 	commands["sens.spec"]			= "sens.spec";
 	commands["seq.error"]			= "seq.error";
+	commands["summary.tax"]			= "summary.tax";
+	commands["summary.qual"]		= "summary.qual";
+	commands["shhh.seqs"]			= "shhh.seqs";
+	commands["otu.association"]		= "otu.association";
+    commands["sort.seqs"]           = "sort.seqs";
+    commands["classify.tree"]       = "classify.tree";
+    commands["cooccurrence"]        = "cooccurrence";
+    commands["pcr.seqs"]            = "pcr.seqs";
+    commands["create.database"]     = "create.database";
 	commands["quit"]				= "MPIEnabled"; 
 
 }
@@ -270,15 +304,60 @@ CommandFactory::~CommandFactory(){
 	delete shellcommand;
 	delete pipecommand;
 }
+/***********************************************************/
 
+/***********************************************************/
+int CommandFactory::checkForRedirects(string optionString) {
+    try {
+        
+        int pos = optionString.find("outputdir");
+        if (pos != string::npos) { //user has set outputdir in command option string
+            string outputOption = "";
+            bool foundEquals = false;
+            for(int i=pos;i<optionString.length();i++){
+                if(optionString[i] == ',')       { break;               }		
+                else if(optionString[i] == '=')  { foundEquals = true;	}
+                if (foundEquals)       {   outputOption += optionString[i]; }
+            }
+            if(m->dirCheck(outputOption)){ 
+                setOutputDirectory(outputOption); 
+                m->mothurOut("Setting output directory to: " + outputOption); m->mothurOutEndLine();
+            }
+        }
+        
+        pos = optionString.find("inputdir");
+        if (pos != string::npos) { //user has set inputdir in command option string
+            string intputOption = "";
+            bool foundEquals = false;
+            for(int i=pos;i<optionString.length();i++){
+                if(optionString[i] == ',')       { break;               }		
+                else if(optionString[i] == '=')  { foundEquals = true;	}
+                if (foundEquals)       {   intputOption += optionString[i]; }
+            }
+            if(m->dirCheck(intputOption)){ 
+                setInputDirectory(intputOption); 
+                m->mothurOut("Setting input directory to: " + intputOption); m->mothurOutEndLine();
+            }
+        }
+        
+        return 0;
+	}
+	catch(exception& e) {
+		m->errorOut(e, "CommandFactory", "getCommand");
+		exit(1);
+	}
+}
 /***********************************************************/
 
 /***********************************************************/
 //This function calls the appropriate command fucntions based on user input.
 Command* CommandFactory::getCommand(string commandName, string optionString){
 	try {
+        
 		delete command;   //delete the old command
-		
+        
+        checkForRedirects(optionString);
+        		
 		//user has opted to redirect output from dir where input files are located to some other place
 		if (outputDir != "") { 
 			if (optionString != "") { optionString += ", outputdir=" + outputDir; }
@@ -320,8 +399,6 @@ Command* CommandFactory::getCommand(string commandName, string optionString){
 		else if(commandName == "get.oturep")			{   command = new GetOTURepCommand(optionString);				}
 		else if(commandName == "tree.shared")			{   command = new TreeGroupCommand(optionString);				}
 		else if(commandName == "dist.shared")			{   command = new MatrixOutputCommand(optionString);			}
-		else if(commandName == "bootstrap.shared")		{   command = new BootSharedCommand(optionString);				}
-		else if(commandName == "consensus")				{   command = new ConcensusCommand(optionString);				}
 		else if(commandName == "dist.seqs")				{   command = new DistanceCommand(optionString);				}
 		else if(commandName == "align.seqs")			{   command = new AlignCommand(optionString);					}
 		else if(commandName == "summary.seqs")			{	command = new SeqSummaryCommand(optionString);				}
@@ -329,8 +406,7 @@ Command* CommandFactory::getCommand(string commandName, string optionString){
 		else if(commandName == "reverse.seqs")			{	command = new ReverseSeqsCommand(optionString);				}
 		else if(commandName == "trim.seqs")				{	command = new TrimSeqsCommand(optionString);				}
 		else if(commandName == "trim.flows")			{	command = new TrimFlowsCommand(optionString);				}
-		else if(commandName == "shhh.seqs")				{	command = new ShhherCommand(optionString);					}
-		else if(commandName == "chimera.seqs")			{	command = new ChimeraSeqsCommand(optionString);				}
+		else if(commandName == "shhh.flows")			{	command = new ShhherCommand(optionString);					}
 		else if(commandName == "list.seqs")				{	command = new ListSeqsCommand(optionString);				}
 		else if(commandName == "get.seqs")				{	command = new GetSeqsCommand(optionString);					}
 		else if(commandName == "remove.seqs")			{	command = new RemoveSeqsCommand(optionString);				}
@@ -344,6 +420,7 @@ Command* CommandFactory::getCommand(string commandName, string optionString){
 		else if(commandName == "chimera.ccode")			{	command = new ChimeraCcodeCommand(optionString);			}
 		else if(commandName == "chimera.check")			{	command = new ChimeraCheckCommand(optionString);			}
 		else if(commandName == "chimera.slayer")		{	command = new ChimeraSlayerCommand(optionString);			}
+		else if(commandName == "chimera.uchime")		{	command = new ChimeraUchimeCommand(optionString);			}
 		else if(commandName == "chimera.pintail")		{	command = new ChimeraPintailCommand(optionString);			}
 		else if(commandName == "chimera.bellerophon")	{	command = new ChimeraBellerophonCommand(optionString);		}
 		else if(commandName == "phylotype")				{	command = new PhylotypeCommand(optionString);				}
@@ -394,6 +471,25 @@ Command* CommandFactory::getCommand(string commandName, string optionString){
 		else if(commandName == "homova")				{	command = new HomovaCommand(optionString);					}
 		else if(commandName == "mantel")				{	command = new MantelCommand(optionString);					}
 		else if(commandName == "make.fastq")			{	command = new MakeFastQCommand(optionString);				}
+		else if(commandName == "get.current")			{	command = new GetCurrentCommand(optionString);				}
+		else if(commandName == "set.current")			{	command = new SetCurrentCommand(optionString);				}
+		else if(commandName == "anosim")				{	command = new AnosimCommand(optionString);					}
+		else if(commandName == "make.shared")			{	command = new SharedCommand(optionString);					}
+		else if(commandName == "get.commandinfo")		{	command = new GetCommandInfoCommand(optionString);			}
+		else if(commandName == "deunique.tree")			{	command = new DeuniqueTreeCommand(optionString);			}
+		else if(commandName == "count.seqs")			{	command = new CountSeqsCommand(optionString);				}
+		else if(commandName == "count.groups")			{	command = new CountGroupsCommand(optionString);				}
+		else if(commandName == "clear.memory")			{	command = new ClearMemoryCommand(optionString);				}
+		else if(commandName == "summary.tax")			{	command = new SummaryTaxCommand(optionString);				}
+		else if(commandName == "summary.qual")			{	command = new SummaryQualCommand(optionString);				}
+		else if(commandName == "chimera.perseus")		{	command = new ChimeraPerseusCommand(optionString);			}
+		else if(commandName == "shhh.seqs")				{	command = new ShhhSeqsCommand(optionString);				}
+		else if(commandName == "otu.association")		{	command = new OTUAssociationCommand(optionString);			}
+        else if(commandName == "sort.seqs")             {	command = new SortSeqsCommand(optionString);                }
+        else if(commandName == "classify.tree")         {	command = new ClassifyTreeCommand(optionString);            }
+        else if(commandName == "cooccurrence")          {	command = new CooccurrenceCommand(optionString);            }
+        else if(commandName == "pcr.seqs")              {	command = new PcrSeqsCommand(optionString);                 }
+        else if(commandName == "create.database")       {	command = new CreateDatabaseCommand(optionString);          }
 		else											{	command = new NoCommand(optionString);						}
 
 		return command;
@@ -411,6 +507,8 @@ Command* CommandFactory::getCommand(string commandName, string optionString, str
 	try {
 		delete pipecommand;   //delete the old command
 		
+        checkForRedirects(optionString);
+        
 		//user has opted to redirect output from dir where input files are located to some other place
 		if (outputDir != "") { 
 			if (optionString != "") { optionString += ", outputdir=" + outputDir; }
@@ -452,8 +550,6 @@ Command* CommandFactory::getCommand(string commandName, string optionString, str
 		else if(commandName == "get.oturep")			{   pipecommand = new GetOTURepCommand(optionString);				}
 		else if(commandName == "tree.shared")			{   pipecommand = new TreeGroupCommand(optionString);				}
 		else if(commandName == "dist.shared")			{   pipecommand = new MatrixOutputCommand(optionString);			}
-		else if(commandName == "bootstrap.shared")		{   pipecommand = new BootSharedCommand(optionString);				}
-		else if(commandName == "consensus")				{   pipecommand = new ConcensusCommand(optionString);				}
 		else if(commandName == "dist.seqs")				{   pipecommand = new DistanceCommand(optionString);				}
 		else if(commandName == "align.seqs")			{   pipecommand = new AlignCommand(optionString);					}
 		else if(commandName == "summary.seqs")			{	pipecommand = new SeqSummaryCommand(optionString);				}
@@ -461,8 +557,7 @@ Command* CommandFactory::getCommand(string commandName, string optionString, str
 		else if(commandName == "reverse.seqs")			{	pipecommand = new ReverseSeqsCommand(optionString);				}
 		else if(commandName == "trim.seqs")				{	pipecommand = new TrimSeqsCommand(optionString);				}
 		else if(commandName == "trim.flows")			{	pipecommand = new TrimFlowsCommand(optionString);				}
-		else if(commandName == "shhh.seqs")				{	pipecommand = new ShhherCommand(optionString);					}
-		else if(commandName == "chimera.seqs")			{	pipecommand = new ChimeraSeqsCommand(optionString);				}
+		else if(commandName == "shhh.flows")			{	pipecommand = new ShhherCommand(optionString);					}
 		else if(commandName == "list.seqs")				{	pipecommand = new ListSeqsCommand(optionString);				}
 		else if(commandName == "get.seqs")				{	pipecommand = new GetSeqsCommand(optionString);					}
 		else if(commandName == "remove.seqs")			{	pipecommand = new RemoveSeqsCommand(optionString);				}
@@ -475,6 +570,7 @@ Command* CommandFactory::getCommand(string commandName, string optionString, str
 		else if(commandName == "classify.seqs")			{	pipecommand = new ClassifySeqsCommand(optionString);			}
 		else if(commandName == "chimera.ccode")			{	pipecommand = new ChimeraCcodeCommand(optionString);			}
 		else if(commandName == "chimera.check")			{	pipecommand = new ChimeraCheckCommand(optionString);			}
+		else if(commandName == "chimera.uchime")		{	pipecommand = new ChimeraUchimeCommand(optionString);			}
 		else if(commandName == "chimera.slayer")		{	pipecommand = new ChimeraSlayerCommand(optionString);			}
 		else if(commandName == "chimera.pintail")		{	pipecommand = new ChimeraPintailCommand(optionString);			}
 		else if(commandName == "chimera.bellerophon")	{	pipecommand = new ChimeraBellerophonCommand(optionString);		}
@@ -524,7 +620,26 @@ Command* CommandFactory::getCommand(string commandName, string optionString, str
 		else if(commandName == "amova")					{	pipecommand = new AmovaCommand(optionString);					}
 		else if(commandName == "homova")				{	pipecommand = new HomovaCommand(optionString);					}
 		else if(commandName == "mantel")				{	pipecommand = new MantelCommand(optionString);					}
+		else if(commandName == "anosim")				{	pipecommand = new AnosimCommand(optionString);					}
 		else if(commandName == "make.fastq")			{	pipecommand = new MakeFastQCommand(optionString);				}
+		else if(commandName == "get.current")			{	pipecommand = new GetCurrentCommand(optionString);				}
+		else if(commandName == "set.current")			{	pipecommand = new SetCurrentCommand(optionString);				}
+		else if(commandName == "make.shared")			{	pipecommand = new SharedCommand(optionString);					}
+		else if(commandName == "get.commandinfo")		{	pipecommand = new GetCommandInfoCommand(optionString);			}
+		else if(commandName == "deunique.tree")			{	pipecommand = new DeuniqueTreeCommand(optionString);			}
+		else if(commandName == "count.seqs")			{	pipecommand = new CountSeqsCommand(optionString);				}
+		else if(commandName == "count.groups")			{	pipecommand = new CountGroupsCommand(optionString);				}
+		else if(commandName == "clear.memory")			{	pipecommand = new ClearMemoryCommand(optionString);				}
+		else if(commandName == "summary.tax")			{	pipecommand = new SummaryTaxCommand(optionString);				}
+		else if(commandName == "summary.qual")			{	pipecommand = new SummaryQualCommand(optionString);				}
+		else if(commandName == "chimera.perseus")		{	pipecommand = new ChimeraPerseusCommand(optionString);			}
+		else if(commandName == "shhh.seqs")				{	pipecommand = new ShhhSeqsCommand(optionString);				}
+		else if(commandName == "otu.association")		{	pipecommand = new OTUAssociationCommand(optionString);			}
+        else if(commandName == "sort.seqs")             {	pipecommand = new SortSeqsCommand(optionString);                }
+        else if(commandName == "classify.tree")         {	pipecommand = new ClassifyTreeCommand(optionString);            }
+        else if(commandName == "cooccurrence")          {	pipecommand = new CooccurrenceCommand(optionString);            }
+        else if(commandName == "pcr.seqs")              {	pipecommand = new PcrSeqsCommand(optionString);                 }
+        else if(commandName == "create.database")       {	pipecommand = new CreateDatabaseCommand(optionString);          }
 		else											{	pipecommand = new NoCommand(optionString);						}
 
 		return pipecommand;
@@ -571,8 +686,6 @@ Command* CommandFactory::getCommand(string commandName){
 		else if(commandName == "get.oturep")			{   shellcommand = new GetOTURepCommand();				}
 		else if(commandName == "tree.shared")			{   shellcommand = new TreeGroupCommand();				}
 		else if(commandName == "dist.shared")			{   shellcommand = new MatrixOutputCommand();			}
-		else if(commandName == "bootstrap.shared")		{   shellcommand = new BootSharedCommand();				}
-		else if(commandName == "consensus")				{   shellcommand = new ConcensusCommand();				}
 		else if(commandName == "dist.seqs")				{   shellcommand = new DistanceCommand();				}
 		else if(commandName == "align.seqs")			{   shellcommand = new AlignCommand();					}
 		else if(commandName == "summary.seqs")			{	shellcommand = new SeqSummaryCommand();				}
@@ -580,8 +693,7 @@ Command* CommandFactory::getCommand(string commandName){
 		else if(commandName == "reverse.seqs")			{	shellcommand = new ReverseSeqsCommand();			}
 		else if(commandName == "trim.seqs")				{	shellcommand = new TrimSeqsCommand();				}
 		else if(commandName == "trim.flows")			{	shellcommand = new TrimFlowsCommand();				}
-		else if(commandName == "shhh.seqs")				{	shellcommand = new ShhherCommand();					}
-		else if(commandName == "chimera.seqs")			{	shellcommand = new ChimeraSeqsCommand();			}
+		else if(commandName == "shhh.flows")			{	shellcommand = new ShhherCommand();					}
 		else if(commandName == "list.seqs")				{	shellcommand = new ListSeqsCommand();				}
 		else if(commandName == "get.seqs")				{	shellcommand = new GetSeqsCommand();				}
 		else if(commandName == "remove.seqs")			{	shellcommand = new RemoveSeqsCommand();				}
@@ -595,6 +707,7 @@ Command* CommandFactory::getCommand(string commandName){
 		else if(commandName == "chimera.ccode")			{	shellcommand = new ChimeraCcodeCommand();			}
 		else if(commandName == "chimera.check")			{	shellcommand = new ChimeraCheckCommand();			}
 		else if(commandName == "chimera.slayer")		{	shellcommand = new ChimeraSlayerCommand();			}
+		else if(commandName == "chimera.uchime")		{	shellcommand = new ChimeraUchimeCommand();			}
 		else if(commandName == "chimera.pintail")		{	shellcommand = new ChimeraPintailCommand();			}
 		else if(commandName == "chimera.bellerophon")	{	shellcommand = new ChimeraBellerophonCommand();		}
 		else if(commandName == "phylotype")				{	shellcommand = new PhylotypeCommand();				}
@@ -643,7 +756,26 @@ Command* CommandFactory::getCommand(string commandName){
 		else if(commandName == "amova")					{	shellcommand = new AmovaCommand();					}
 		else if(commandName == "homova")				{	shellcommand = new HomovaCommand();					}
 		else if(commandName == "mantel")				{	shellcommand = new MantelCommand();					}
+		else if(commandName == "anosim")				{	shellcommand = new AnosimCommand();					}
 		else if(commandName == "make.fastq")			{	shellcommand = new MakeFastQCommand();				}
+		else if(commandName == "get.current")			{	shellcommand = new GetCurrentCommand();				}
+		else if(commandName == "set.current")			{	shellcommand = new SetCurrentCommand();				}
+		else if(commandName == "make.shared")			{	shellcommand = new SharedCommand();					}
+		else if(commandName == "get.commandinfo")		{	shellcommand = new GetCommandInfoCommand();			}
+		else if(commandName == "deunique.tree")			{	shellcommand = new DeuniqueTreeCommand();			}
+		else if(commandName == "count.seqs")			{	shellcommand = new CountSeqsCommand();				}
+		else if(commandName == "count.groups")			{	shellcommand = new CountGroupsCommand();			}
+		else if(commandName == "clear.memory")			{	shellcommand = new ClearMemoryCommand();			}
+		else if(commandName == "summary.tax")			{	shellcommand = new SummaryTaxCommand();				}
+		else if(commandName == "summary.qual")			{	shellcommand = new SummaryQualCommand();			}
+		else if(commandName == "chimera.perseus")		{	shellcommand = new ChimeraPerseusCommand();			}
+		else if(commandName == "shhh.seqs")				{	shellcommand = new ShhhSeqsCommand();				}
+		else if(commandName == "otu.association")		{	shellcommand = new OTUAssociationCommand();			}
+        else if(commandName == "sort.seqs")             {	shellcommand = new SortSeqsCommand();               }
+        else if(commandName == "classify.tree")         {	shellcommand = new ClassifyTreeCommand();           }
+        else if(commandName == "cooccurrence")          {	shellcommand = new CooccurrenceCommand();           }
+        else if(commandName == "pcr.seqs")              {	shellcommand = new PcrSeqsCommand();                }
+        else if(commandName == "create.database")       {	shellcommand = new CreateDatabaseCommand();         }
 		else											{	shellcommand = new NoCommand();						}
 
 		return shellcommand;
@@ -669,7 +801,7 @@ Command* CommandFactory::getCommand(){
 		exit(1);
 	}
 }
-/***********************************************************************/
+***********************************************************************/
 bool CommandFactory::isValidCommand(string command) {
 	try {