X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=commandfactory.cpp;h=d41e4a81c76269baf17ca1c36b25ca5d1a57711b;hb=526a868606faa50caf86e7399f7554c0335b39e5;hp=56fd56b348bdb497cdb04b01d01f4c3a87901a61;hpb=29351fe29c017d2225366418973ed0e000ce5293;p=mothur.git

diff --git a/commandfactory.cpp b/commandfactory.cpp
index 56fd56b..d41e4a8 100644
--- a/commandfactory.cpp
+++ b/commandfactory.cpp
@@ -31,8 +31,17 @@
 #include "unifracweightedcommand.h"
 #include "libshuffcommand.h"
 #include "heatmapcommand.h"
+#include "filterseqscommand.h"
 #include "mothur.h"
+#include "venncommand.h"
 #include "nocommands.h"
+#include "binsequencecommand.h"
+#include "getoturepcommand.h"
+#include "treegroupscommand.h"
+#include "bootstrapsharedcommand.h"
+#include "concensuscommand.h"
+#include "distancecommand.h"
+#include "aligncommand.h"
 
 
 /***********************************************************/
@@ -77,6 +86,15 @@ Command* CommandFactory::getCommand(string commandName){
 		else if(commandName == "get.line")              {   command = new GetlineCommand();				}
 		else if(commandName == "libshuff")              {   command = new LibShuffCommand();			}
 		else if(commandName == "heatmap")				{   command = new HeatMapCommand();				}
+		else if(commandName == "filter.seqs")			{   command = new FilterSeqsCommand();          }
+		else if(commandName == "venn")					{   command = new VennCommand();				}
+		else if(commandName == "bin.seqs")				{   command = new BinSeqCommand();				}
+		else if(commandName == "get.oturep")			{   command = new GetOTURepCommand();			}
+		else if(commandName == "tree.shared")			{   command = new TreeGroupCommand();			}
+		else if(commandName == "bootstrap.shared")		{   command = new BootSharedCommand();			}
+		else if(commandName == "concensus")				{   command = new ConcensusCommand();			}
+		else if(commandName == "dist.seqs")				{   command = new DistanceCommand();			}
+		else if(commandName == "align.seqs")			{   command = new AlignCommand();				}
 		else											{	command = new NoCommand();					}
 
 		return command;