X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=commandfactory.cpp;h=b4e68e4cd67de88de0198251f2d595c9e000a498;hb=3329385a816a97bdde934d98a615865c29eaacad;hp=0c1b3e075ee8ade15e0ea619463df962e9eac846;hpb=09a01fb51eea9e81409d367410c831394193fd86;p=mothur.git

diff --git a/commandfactory.cpp b/commandfactory.cpp
index 0c1b3e0..b4e68e4 100644
--- a/commandfactory.cpp
+++ b/commandfactory.cpp
@@ -10,17 +10,18 @@
 #include "command.hpp"
 #include "readdistcommand.h"
 #include "readtreecommand.h"
-#include "readsharedcommand.h"
 #include "readotucommand.h"
 #include "clustercommand.h"
 #include "parselistcommand.h"
 #include "collectcommand.h"
 #include "collectsharedcommand.h"
+#include "getgroupcommand.h"
+#include "getlabelcommand.h"
+#include "getlinecommand.h"
 #include "rarefactcommand.h"
 #include "summarycommand.h"
 #include "summarysharedcommand.h"
 #include "rarefactsharedcommand.h"
-#include "nocommand.h"
 #include "quitcommand.h"
 #include "helpcommand.h"
 #include "commandfactory.hpp"
@@ -28,7 +29,13 @@
 #include "parsimonycommand.h"
 #include "unifracunweightedcommand.h"
 #include "unifracweightedcommand.h"
-#include <exception>
+#include "libshuffcommand.h"
+#include "heatmapcommand.h"
+#include "venncommand.h"
+#include "nocommands.h"
+#include "binsequencecommand.h"
+#include "getoturepcommand.h"
+#include "treegroupscommand.h"
 
 
 /***********************************************************/
@@ -37,7 +44,6 @@
 CommandFactory::CommandFactory(){
 	command = new NoCommand();
 }
-
 /***********************************************************/
 
 /***********************************************************/
@@ -56,7 +62,6 @@ Command* CommandFactory::getCommand(string commandName){
 			 if(commandName == "read.dist")				{	command = new ReadDistCommand();			}
 		else if(commandName == "read.otu")				{	command = new ReadOtuCommand();				}
 		else if(commandName == "read.tree")				{	command = new ReadTreeCommand();			}
-		else if(commandName == "read.shared")			{	command = new ReadSharedCommand();			}
 		else if(commandName == "cluster")				{	command = new ClusterCommand();				}
 		else if(commandName == "deconvolute")			{	command = new DeconvoluteCommand();			}
 		else if(commandName == "parsimony")				{	command = new ParsimonyCommand();			}
@@ -70,8 +75,17 @@ Command* CommandFactory::getCommand(string commandName){
 		else if(commandName == "summary.shared")		{	command = new SummarySharedCommand();		}
 		else if(commandName == "unifrac.weighted")		{	command = new UnifracWeightedCommand();		}
 		else if(commandName == "unifrac.unweighted")	{	command = new UnifracUnweightedCommand();	}
+		else if(commandName == "get.group")             {   command = new GetgroupCommand();			}
+		else if(commandName == "get.label")             {   command = new GetlabelCommand();			}
+		else if(commandName == "get.line")              {   command = new GetlineCommand();				}
+		else if(commandName == "libshuff")              {   command = new LibShuffCommand();			}
+		else if(commandName == "heatmap")				{   command = new HeatMapCommand();				}
+		else if(commandName == "venn")					{   command = new VennCommand();				}
+		else if(commandName == "bin.seqs")				{   command = new BinSeqCommand();				}
+		else if(commandName == "get.oturep")			{   command = new GetOTURepCommand();			}
+		else if(commandName == "tree.groups")			{   command = new TreeGroupCommand();			}
 		else											{	command = new NoCommand();					}
-			
+
 		return command;
 	}
 	catch(exception& e) {