X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=commandfactory.cpp;h=8653643a0e5f89058f95842bfdb134b711ab4de5;hb=b866e1519a60681527244036428104ad1cb90c93;hp=02af6767b00b724459c054839b789798f4b295f7;hpb=dc383fb61b6d165a8d36e6108df8bc7129243ae6;p=mothur.git

diff --git a/commandfactory.cpp b/commandfactory.cpp
index 02af676..8653643 100644
--- a/commandfactory.cpp
+++ b/commandfactory.cpp
@@ -134,6 +134,7 @@
 #include "removeotulabelscommand.h"
 #include "makecontigscommand.h"
 #include "loadlogfilecommand.h"
+#include "sffmultiplecommand.h"
 
 /*******************************************************/
 
@@ -290,6 +291,7 @@ CommandFactory::CommandFactory(){
     commands["make.contigs"]        = "make.contigs";
     commands["load.logfile"]        = "load.logfile";
     commands["make.table"]          = "make.table";
+    commands["sff.multiple"]        = "sff.multiple";
 	commands["quit"]				= "MPIEnabled"; 
 
 }
@@ -503,6 +505,7 @@ Command* CommandFactory::getCommand(string commandName, string optionString){
         else if(commandName == "remove.otulabels")      {	command = new RemoveOtuLabelsCommand(optionString);         }
         else if(commandName == "make.contigs")          {	command = new MakeContigsCommand(optionString);             }
         else if(commandName == "load.logfile")          {	command = new LoadLogfileCommand(optionString);             }
+        else if(commandName == "sff.multiple")          {	command = new SffMultipleCommand(optionString);             }
 		else											{	command = new NoCommand(optionString);						}
 
 		return command;
@@ -657,6 +660,7 @@ Command* CommandFactory::getCommand(string commandName, string optionString, str
         else if(commandName == "remove.otulabels")      {	pipecommand = new RemoveOtuLabelsCommand(optionString);         }
         else if(commandName == "make.contigs")          {	pipecommand = new MakeContigsCommand(optionString);             }
         else if(commandName == "load.logfile")          {	pipecommand = new LoadLogfileCommand(optionString);             }
+        else if(commandName == "sff.multiple")          {	pipecommand = new SffMultipleCommand(optionString);             }
 		else											{	pipecommand = new NoCommand(optionString);						}
 
 		return pipecommand;
@@ -797,6 +801,7 @@ Command* CommandFactory::getCommand(string commandName){
         else if(commandName == "remove.otulabels")      {	shellcommand = new RemoveOtuLabelsCommand();        }
         else if(commandName == "make.contigs")          {	shellcommand = new MakeContigsCommand();            }
         else if(commandName == "load.logfile")          {	shellcommand = new LoadLogfileCommand();            }
+        else if(commandName == "sff.multiple")          {	shellcommand = new SffMultipleCommand();            }
 		else											{	shellcommand = new NoCommand();						}
 
 		return shellcommand;