X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=commandfactory.cpp;h=6c6bc17bb3dfd47f31b68facd01d6e0724cf3d8d;hb=1a968f34ae2d2680eaf189a197d1a21b8dfd6c03;hp=ce51d7228b415228da4c6c15121001989d03b75a;hpb=4b54ce99af7db8019ea907cd7c2edf789369ada9;p=mothur.git

diff --git a/commandfactory.cpp b/commandfactory.cpp
index ce51d72..6c6bc17 100644
--- a/commandfactory.cpp
+++ b/commandfactory.cpp
@@ -138,6 +138,10 @@
 #include "classifysharedcommand.h"
 #include "filtersharedcommand.h"
 #include "primerdesigncommand.h"
+#include "getdistscommand.h"
+#include "removedistscommand.h"
+#include "mergetaxsummarycommand.h"
+#include "getmetacommunitycommand.h"
 
 /*******************************************************/
 
@@ -298,7 +302,11 @@ CommandFactory::CommandFactory(){
 	commands["quit"]				= "MPIEnabled"; 
     commands["classify.shared"]		= "classify.shared"; 
     commands["filter.shared"]		= "filter.shared"; 
-    commands["primer.design"]		= "primer.design"; 
+    commands["primer.design"]		= "primer.design";
+    commands["get.dists"]           = "get.dists";
+    commands["remove.dists"]        = "remove.dists";
+    commands["merge.taxsummary"]    = "merge.taxsummary";
+    commands["get.metacommunity"]   = "get.metacommunity";
     
 
 }
@@ -516,6 +524,10 @@ Command* CommandFactory::getCommand(string commandName, string optionString){
         else if(commandName == "classify.shared")       {	command = new ClassifySharedCommand(optionString);          }
         else if(commandName == "filter.shared")         {	command = new FilterSharedCommand(optionString);            }
         else if(commandName == "primer.design")         {	command = new PrimerDesignCommand(optionString);            }
+        else if(commandName == "get.dists")             {	command = new GetDistsCommand(optionString);                }
+        else if(commandName == "remove.dists")          {	command = new RemoveDistsCommand(optionString);             }
+        else if(commandName == "merge.taxsummary")      {	command = new MergeTaxSummaryCommand(optionString);         }
+        else if(commandName == "get.metacommunity")     {	command = new GetMetaCommunityCommand(optionString);        }
 		else											{	command = new NoCommand(optionString);						}
 
 		return command;
@@ -674,6 +686,10 @@ Command* CommandFactory::getCommand(string commandName, string optionString, str
         else if(commandName == "classify.shared")       {	pipecommand = new ClassifySharedCommand(optionString);          }
         else if(commandName == "filter.shared")         {	pipecommand = new FilterSharedCommand(optionString);            }
         else if(commandName == "primer.design")         {	pipecommand = new PrimerDesignCommand(optionString);            }
+        else if(commandName == "get.dists")             {	pipecommand = new GetDistsCommand(optionString);                }
+        else if(commandName == "remove.dists")          {	pipecommand = new RemoveDistsCommand(optionString);             }
+        else if(commandName == "merge.taxsummary")      {	pipecommand = new MergeTaxSummaryCommand(optionString);         }
+        else if(commandName == "get.metacommunity")     {	pipecommand = new GetMetaCommunityCommand(optionString);        }
 		else											{	pipecommand = new NoCommand(optionString);						}
 
 		return pipecommand;
@@ -818,6 +834,10 @@ Command* CommandFactory::getCommand(string commandName){
         else if(commandName == "classify.shared")       {	shellcommand = new ClassifySharedCommand();         }
         else if(commandName == "filter.shared")         {	shellcommand = new FilterSharedCommand();           }
         else if(commandName == "primer.design")         {	shellcommand = new PrimerDesignCommand();           }
+        else if(commandName == "get.dists")             {	shellcommand = new GetDistsCommand();               }
+        else if(commandName == "remove.dists")          {	shellcommand = new RemoveDistsCommand();            }
+        else if(commandName == "merge.taxsummary")      {	shellcommand = new MergeTaxSummaryCommand();        }
+        else if(commandName == "get.metacommunity")     {	shellcommand = new GetMetaCommunityCommand();       }
 		else											{	shellcommand = new NoCommand();						}
 
 		return shellcommand;