X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=commandfactory.cpp;h=4d2b0ae2b93a6e205ae8b8d24a86dea37c2f6606;hb=62568a297aaf939ab753334f17abde82ec8e8531;hp=2ac61e33e3252af5581b78b21168a5e2fbe760fb;hpb=21805b1c466a341d64a5a451f156a56d12c75dca;p=mothur.git

diff --git a/commandfactory.cpp b/commandfactory.cpp
index 2ac61e3..4d2b0ae 100644
--- a/commandfactory.cpp
+++ b/commandfactory.cpp
@@ -75,6 +75,10 @@
 #include "phylodiversitycommand.h"
 #include "makegroupcommand.h"
 #include "chopseqscommand.h"
+#include "clearcutcommand.h"
+#include "catchallcommand.h"
+#include "splitabundcommand.h"
+#include "clustersplitcommand.h"
 
 /*******************************************************/
 
@@ -157,6 +161,10 @@ CommandFactory::CommandFactory(){
 	commands["phylo.diversity"]		= "phylo.diversity";
 	commands["make.group"]			= "make.group";
 	commands["chop.seqs"]			= "chop.seqs";
+	commands["clearcut"]			= "clearcut";
+	commands["catchall"]			= "catchall";
+	commands["split.abund"]			= "split.abund";
+	//commands["cluster.split"]		= "cluster.split";
 	commands["classify.seqs"]		= "MPIEnabled"; 
 	commands["dist.seqs"]			= "MPIEnabled";
 	commands["filter.seqs"]			= "MPIEnabled";
@@ -276,6 +284,10 @@ Command* CommandFactory::getCommand(string commandName, string optionString){
 		else if(commandName == "phylo.diversity")		{	command = new PhyloDiversityCommand(optionString);			}
 		else if(commandName == "make.group")			{	command = new MakeGroupCommand(optionString);				}
 		else if(commandName == "chop.seqs")				{	command = new ChopSeqsCommand(optionString);				}
+		else if(commandName == "clearcut")				{	command = new ClearcutCommand(optionString);				}
+		else if(commandName == "catchall")				{	command = new CatchAllCommand(optionString);				}
+		else if(commandName == "split.abund")			{	command = new SplitAbundCommand(optionString);				}
+		//else if(commandName == "cluster.split")			{	command = new ClusterSplitCommand(optionString);			}
 		else											{	command = new NoCommand(optionString);						}
 
 		return command;