X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=commandfactory.cpp;h=21e7b54548a370065ab554d3a2b0f7b5c4887146;hb=0e14094b51dd81c07c6a56b7b51533eff2332339;hp=b6f63aa8f873296ef0bc146e2bb0cdcf9edb835c;hpb=8b0092350db86c42868c7093282f349f1f1761b4;p=mothur.git

diff --git a/commandfactory.cpp b/commandfactory.cpp
index b6f63aa..21e7b54 100644
--- a/commandfactory.cpp
+++ b/commandfactory.cpp
@@ -30,14 +30,28 @@
 #include "unifracunweightedcommand.h"
 #include "unifracweightedcommand.h"
 #include "libshuffcommand.h"
+#include "heatmapcommand.h"
+#include "filterseqscommand.h"
 #include "mothur.h"
+#include "venncommand.h"
+#include "nocommands.h"
+#include "binsequencecommand.h"
+#include "getoturepcommand.h"
+#include "treegroupscommand.h"
+#include "bootstrapsharedcommand.h"
+#include "concensuscommand.h"
+#include "distancecommand.h"
+#include "aligncommand.h"
+#include "getrepseqscommand.h"
+#include "matrixoutputcommand.h"
 
 
 /***********************************************************/
 
 /***********************************************************/
-CommandFactory::CommandFactory(){}
-
+CommandFactory::CommandFactory(){
+	command = new NoCommand();
+}
 /***********************************************************/
 
 /***********************************************************/
@@ -73,6 +87,19 @@ Command* CommandFactory::getCommand(string commandName){
 		else if(commandName == "get.label")             {   command = new GetlabelCommand();			}
 		else if(commandName == "get.line")              {   command = new GetlineCommand();				}
 		else if(commandName == "libshuff")              {   command = new LibShuffCommand();			}
+		else if(commandName == "heatmap")				{   command = new HeatMapCommand();				}
+		else if(commandName == "filter.seqs")			{   command = new FilterSeqsCommand();          }
+		else if(commandName == "venn")					{   command = new VennCommand();				}
+		else if(commandName == "bin.seqs")				{   command = new BinSeqCommand();				}
+		else if(commandName == "get.repseqs")			{   command = new GetRepSeqsCommand();			}
+		else if(commandName == "get.oturep")			{   command = new GetOTURepCommand();			}
+		else if(commandName == "tree.shared")			{   command = new TreeGroupCommand();			}
+		else if(commandName == "dist.shared")			{   command = new MatrixOutputCommand();		}
+		else if(commandName == "bootstrap.shared")		{   command = new BootSharedCommand();			}
+		else if(commandName == "concensus")				{   command = new ConcensusCommand();			}
+		else if(commandName == "dist.seqs")				{   command = new DistanceCommand();			}
+		else if(commandName == "align.seqs")			{   command = new AlignCommand();				}
+		else											{	command = new NoCommand();					}
 
 		return command;
 	}