X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=commandfactory.cpp;h=06e7e84f06602796d143cdb8d535e46006dc0fb1;hb=cdcf99b7760701e6869ca8e4e6e91c8e8c4ae186;hp=1f6f828faa16e6a1473431057ae02962efe06921;hpb=50ed3b6104d5821d6184f882e1e1423d47dcbf10;p=mothur.git diff --git a/commandfactory.cpp b/commandfactory.cpp index 1f6f828..06e7e84 100644 --- a/commandfactory.cpp +++ b/commandfactory.cpp @@ -31,6 +31,8 @@ #include "unifracweightedcommand.h" #include "libshuffcommand.h" #include "heatmapcommand.h" +#include "filterseqscommand.h" +#include "mothur.h" #include "venncommand.h" #include "nocommands.h" #include "binsequencecommand.h" @@ -38,6 +40,9 @@ #include "treegroupscommand.h" #include "bootstrapsharedcommand.h" #include "concensuscommand.h" +#include "distancecommand.h" +#include "aligncommand.h" +#include "matrixoutputcommand.h" /***********************************************************/ @@ -82,12 +87,16 @@ Command* CommandFactory::getCommand(string commandName){ else if(commandName == "get.line") { command = new GetlineCommand(); } else if(commandName == "libshuff") { command = new LibShuffCommand(); } else if(commandName == "heatmap") { command = new HeatMapCommand(); } + else if(commandName == "filter.seqs") { command = new FilterSeqsCommand(); } else if(commandName == "venn") { command = new VennCommand(); } else if(commandName == "bin.seqs") { command = new BinSeqCommand(); } else if(commandName == "get.oturep") { command = new GetOTURepCommand(); } else if(commandName == "tree.shared") { command = new TreeGroupCommand(); } + else if(commandName == "dist.shared") { command = new MatrixOutputCommand(); } else if(commandName == "bootstrap.shared") { command = new BootSharedCommand(); } else if(commandName == "concensus") { command = new ConcensusCommand(); } + else if(commandName == "dist.seqs") { command = new DistanceCommand(); } + else if(commandName == "align.seqs") { command = new AlignCommand(); } else { command = new NoCommand(); } return command;