X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=command.hpp;h=f65f6cc0fb14ab1d892dbcc5df567c086ca183c9;hb=5e031adc86a1fc125c4abb3d4048f209d52f9b6d;hp=1dd5e871aaa66362e02e997c9ff26b427ed9178a;hpb=02909d6cae9963ba00dc746969a370fa8ca934fc;p=mothur.git

diff --git a/command.hpp b/command.hpp
index 1dd5e87..f65f6cc 100644
--- a/command.hpp
+++ b/command.hpp
@@ -16,13 +16,25 @@
 #include "mothur.h"
 #include "optionparser.h"
 #include "validparameter.h"
+#include "mothurout.h"
 
 class Command {
 	
 	public:
+		Command() {  m = MothurOut::getInstance();   }
+		virtual vector<string> getValidParameters() = 0;
+		virtual vector<string> getRequiredParameters() = 0; //adding "or" as the last element indicates one of the previous is needed
+		virtual vector<string> getRequiredFiles() = 0; //adding "or" as the last element indicates one of the previous is needed
+		virtual map<string, vector<string> > getOutputFiles() = 0; //file type to names
 		virtual int execute() = 0;
 		virtual void help() = 0;
 		virtual ~Command() { }
+	protected:
+		MothurOut* m;
+		
+		bool calledHelp;
+	
+		map<string, vector<string> >::iterator itTypes;
 };
 
 #endif