X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=command.hpp;h=2d1981aa4cca8d7e608e3708750fc079600d1265;hb=f6c7165727bc17a5fbbcbb774d75ccffeb7f3da5;hp=ddb776356a183e0c310997ea7f9cb0acfc5e5c02;hpb=c69e2e9749626cfbf1d6cb0125ae94f869e00b18;p=mothur.git

diff --git a/command.hpp b/command.hpp
index ddb7763..2d1981a 100644
--- a/command.hpp
+++ b/command.hpp
@@ -17,11 +17,12 @@
 #include "optionparser.h"
 #include "validparameter.h"
 #include "mothurout.h"
+#include "currentfile.h"
 
 class Command {
 	
 	public:
-		Command() {  m = MothurOut::getInstance();  }
+		Command() {  m = MothurOut::getInstance(); currentFiles = CurrentFile::getInstance();  }
 		virtual vector<string> getValidParameters() = 0;
 		virtual vector<string> getRequiredParameters() = 0; //adding "or" as the last element indicates one of the previous is needed
 		virtual vector<string> getRequiredFiles() = 0; //adding "or" as the last element indicates one of the previous is needed
@@ -31,7 +32,10 @@ class Command {
 		virtual ~Command() { }
 	protected:
 		MothurOut* m;
+		CurrentFile* currentFiles;
 		bool calledHelp;
+	
+		map<string, vector<string> >::iterator itTypes;
 };
 
 #endif