X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=command.hpp;h=22f118164eb04e7d22c0438e3e42c56b79ed0f3d;hb=d205e70ae86dbee2efc2df02f2717975854de6ba;hp=6a1a4deea6c1df252a627fa827bb33a8f49b439c;hpb=e150b0b0664caec517485ee6d69dcdade6dcae77;p=mothur.git

diff --git a/command.hpp b/command.hpp
index 6a1a4de..22f1181 100644
--- a/command.hpp
+++ b/command.hpp
@@ -1,6 +1,6 @@
 #ifndef COMMAND_HPP
 #define COMMAND_HPP
-
+//test2
 /*
  *  command.h
  *  
@@ -30,6 +30,7 @@ class Command {
 		virtual string getCommandCategory() = 0;
 		virtual string getHelpString() = 0;
 		virtual string getCitation() = 0;
+		virtual string getDescription() = 0;
 		
 		virtual map<string, vector<string> > getOutputFiles() { return outputTypes; }
 		virtual vector<string> setParameters() = 0; //to fill parameters
@@ -37,7 +38,7 @@ class Command {
 	
 		virtual int execute() = 0;
 		virtual void help() = 0;
-		void citation() { m->mothurOut(getCitation()); }
+		void citation() { m->mothurOutEndLine(); m->mothurOut(getCitation()); m->mothurOutEndLine(); }
 		virtual ~Command() { }
 	
 	protected: