X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=command.hpp;fp=command.hpp;h=f65f6cc0fb14ab1d892dbcc5df567c086ca183c9;hb=5e031adc86a1fc125c4abb3d4048f209d52f9b6d;hp=2d1981aa4cca8d7e608e3708750fc079600d1265;hpb=f6c7165727bc17a5fbbcbb774d75ccffeb7f3da5;p=mothur.git

diff --git a/command.hpp b/command.hpp
index 2d1981a..f65f6cc 100644
--- a/command.hpp
+++ b/command.hpp
@@ -17,12 +17,11 @@
 #include "optionparser.h"
 #include "validparameter.h"
 #include "mothurout.h"
-#include "currentfile.h"
 
 class Command {
 	
 	public:
-		Command() {  m = MothurOut::getInstance(); currentFiles = CurrentFile::getInstance();  }
+		Command() {  m = MothurOut::getInstance();   }
 		virtual vector<string> getValidParameters() = 0;
 		virtual vector<string> getRequiredParameters() = 0; //adding "or" as the last element indicates one of the previous is needed
 		virtual vector<string> getRequiredFiles() = 0; //adding "or" as the last element indicates one of the previous is needed
@@ -32,7 +31,7 @@ class Command {
 		virtual ~Command() { }
 	protected:
 		MothurOut* m;
-		CurrentFile* currentFiles;
+		
 		bool calledHelp;
 	
 		map<string, vector<string> >::iterator itTypes;