X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=collectsharedcommand.h;h=d0908de54afb261e4e8184efd6910c3238848d2b;hb=078d7227da8dda9ae8620822fa32d51ec2706fc3;hp=a10fd554a2f6e062bdecd37eb7e357d6de5283e6;hpb=e150b0b0664caec517485ee6d69dcdade6dcae77;p=mothur.git

diff --git a/collectsharedcommand.h b/collectsharedcommand.h
index a10fd55..d0908de 100644
--- a/collectsharedcommand.h
+++ b/collectsharedcommand.h
@@ -29,9 +29,11 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "collect.shared";			}
 	string getCommandCategory()		{ return "OTU-Based Approaches";	}
+	string getOutputFileNameTag(string, string);
 	string getHelpString();	
-	string getCitation() { return "http://www.mothur.org/wiki/Collect.shared"; }
-	
+	string getCitation() { return "Schloss PD, Handelsman J (2006). Introducing SONS, A tool that compares the membership of microbial communities. Appl Environ Microbiol 72: 6773-9. \nhttp://www.mothur.org/wiki/Collect.shared"; }
+	string getDescription()		{ return "generates collector's curves for calculators, which describe the similarity between communities or their shared richness"; }
+
 	int execute(); 
 	void help() { m->mothurOut(getHelpString()); }