X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=collectsharedcommand.h;h=327ce5d28832dbe7f25d69f6c0755f6e931c747d;hb=4116449310d17a847470b84728cdefee5197e67e;hp=e8b7b96a608453f5c5c7c6e510cd9b96bacd661b;hpb=f37a59b81c339f574d97042ff6e364146feb457a;p=mothur.git

diff --git a/collectsharedcommand.h b/collectsharedcommand.h
index e8b7b96..327ce5d 100644
--- a/collectsharedcommand.h
+++ b/collectsharedcommand.h
@@ -27,7 +27,12 @@ class CollectSharedCommand : public Command {
 	
 public:
 	CollectSharedCommand(string);	
+	CollectSharedCommand();	
 	~CollectSharedCommand();
+	vector<string> getRequiredParameters();
+	vector<string> getValidParameters();
+	vector<string> getRequiredFiles();
+	map<string, vector<string> > getOutputFiles() { return outputTypes; }
 	int execute();	
 	void help();
 	
@@ -42,13 +47,14 @@ private:
 	ValidCalculators* validCalculator;
 	Collect* cCurve;
 	vector<Display*> cDisplays;
-	int freq;
+	float freq;
 	string format;
 
-	bool abort, allLines;
+	bool abort, allLines, all;
 	set<string> labels; //holds labels to be used
-	string label, calc, groups;
-	vector<string>  Estimators, Groups;
+	string label, calc, groups, outputDir;
+	vector<string>  Estimators, Groups, outputNames;
+	map<string, vector<string> > outputTypes;
 
 
 };