X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=collectsharedcommand.h;fp=collectsharedcommand.h;h=e8b7b96a608453f5c5c7c6e510cd9b96bacd661b;hb=f37a59b81c339f574d97042ff6e364146feb457a;hp=67e8e0c1073dae0a81f5d4d8e88ac7ee4981d708;hpb=cc1838f288a7712d44929fca5175ce89f3a58f12;p=mothur.git

diff --git a/collectsharedcommand.h b/collectsharedcommand.h
index 67e8e0c..e8b7b96 100644
--- a/collectsharedcommand.h
+++ b/collectsharedcommand.h
@@ -21,19 +21,6 @@
 #include "validcalculator.h"
 #include "sharedutilities.h"
 
-/* The collect.shared() command:
-	The collect command generates a collector's curve from the given file representing several groups.  
-	The collect.shared command can only be executed after a successful read.shared command. 
-	It outputs a file for each estimator you choose to use.  The collect.shared command parameters are label, line, freq and shared.  
-	No parameters are required, but you may not use both the line and label parameters at the same time. 
-	The collect.shared command should be in the following format: collect.shared(label=yourLabel, line=yourLines, 
-	freq=yourFreq, shared=yourEstimators). Example collect.shared(label=unique-.01-.03, line=0,5,10, freq=10, 
-	shared=sharedChao-sharedAce-sharedJabund). The default value for
-	freq is 100 and shared are sharedChao-sharedAce-sharedJabund-sharedSorensonAbund-sharedJclass-sharedSorClass-sharedJest-sharedSorEst-SharedThetaYC-SharedThetaN.  
-	The valid shared estimators are: sharedChao-sharedAce-sharedJabund-sharedSorensonAbund-sharedJclass-sharedSorClass-sharedJest-sharedSorEst-SharedThetaYC-SharedThetaN.  
-	The label and line parameters are used to analyze specific lines in your input. */
-
-
 class GlobalData;
 
 class CollectSharedCommand : public Command {
@@ -59,9 +46,8 @@ private:
 	string format;
 
 	bool abort, allLines;
-	set<int> lines; //hold lines to be used
 	set<string> labels; //holds labels to be used
-	string line, label, calc, groups;
+	string label, calc, groups;
 	vector<string>  Estimators, Groups;