X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=collectsharedcommand.cpp;h=e989233c7b86c3efae39d5a7f1b5b0541a365bd5;hb=9ca2caadbeac83bb84b3330d9204b1b659d62941;hp=c473c2d77e819164d62799095ea6bf849d27c42a;hpb=7e0cf6431e287072c40b2c10c9e08199fce29ef4;p=mothur.git

diff --git a/collectsharedcommand.cpp b/collectsharedcommand.cpp
index c473c2d..e989233 100644
--- a/collectsharedcommand.cpp
+++ b/collectsharedcommand.cpp
@@ -19,6 +19,7 @@
 #include "sharedsorest.h"
 #include "sharedthetayc.h"
 #include "sharedthetan.h"
+#include "sharednseqs.h"
 
 
 //**********************************************************************************************************************
@@ -31,9 +32,6 @@ CollectSharedCommand::CollectSharedCommand(){
 		format = globaldata->getFormat();
 		validCalculator = new ValidCalculators();
 		
-		//set users groups
-		setGroups();
-		
 		int i;
 		for (i=0; i<globaldata->Estimators.size(); i++) {
 			if (validCalculator->isValidCalculator("shared", globaldata->Estimators[i]) == true) { 
@@ -59,7 +57,10 @@ CollectSharedCommand::CollectSharedCommand(){
 					cDisplays.push_back(new CollectDisplay(new SharedThetaYC(), new SharedOneColumnFile(fileNameRoot+"shared.thetayc")));
 				}else if (globaldata->Estimators[i] == "sharedthetan") { 
 					cDisplays.push_back(new CollectDisplay(new SharedThetaN(), new SharedOneColumnFile(fileNameRoot+"shared.thetan")));
+				}else if (globaldata->Estimators[i] == "sharednseqs") { 
+					cDisplays.push_back(new CollectDisplay(new SharedNSeqs(), new SharedOneColumnFile(fileNameRoot+"shared.nseqs")));
 				}
+
 			}
 		}
 		
@@ -112,6 +113,9 @@ int CollectSharedCommand::execute(){
 			order = SharedList->getSharedOrderVector();
 		}
 		set<string> orderList;
+		
+		//set users groups
+		setGroups();
 
 		while(order != NULL){
 			orderList.insert(order->getLabel());