X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=collectdisplay.h;fp=collectdisplay.h;h=0000000000000000000000000000000000000000;hb=4a877efa127e56e81a21f53cfdbbfd3bfbe8c4ff;hp=781cea1824dc77cb445819c94aed3173786baa94;hpb=a6cf29fa4dac0909c7582cb1094151d34093ee76;p=mothur.git

diff --git a/collectdisplay.h b/collectdisplay.h
deleted file mode 100644
index 781cea1..0000000
--- a/collectdisplay.h
+++ /dev/null
@@ -1,110 +0,0 @@
-#ifndef COLLECTDISPLAY_H
-#define COLLECTDISPLAY_H
-
-#include "sabundvector.hpp"
-#include "sharedsabundvector.h"
-#include "calculator.h"
-#include "fileoutput.h"
-#include "display.h"
-
-
-/***********************************************************************/
-
-class CollectDisplay : public Display {
-	
-public:
-	CollectDisplay(Calculator* calc, FileOutput* file) : estimate(calc), output(file) {timesCalled = 0;};
-	~CollectDisplay()	{	delete estimate; delete output;		}
-	
-	
-	void update(SAbundVector* rank){
-		nSeqs=rank->getNumSeqs();
-		data = estimate->getValues(rank);
-		output->output(nSeqs, data);	
-	};
-	
-	void update(vector<SharedRAbundVector*> shared, int numSeqs, int numGroups){
-		timesCalled++;
-		data = estimate->getValues(shared);  //passes estimators a shared vector from each group to be compared
-		
-		//figure out what groups are being compared in getValues
-		//because we randomizes the order we need to put the results in the correct column in the output file
-		int group1Index, group2Index, pos;
-		
-		vector<string> mGroups = m->getGroups();
-		for (int i = 0; i < mGroups.size(); i++) {
-			if (shared[0]->getGroup() == mGroups[i]) { group1Index = i; }
-			if (shared[1]->getGroup() == mGroups[i]) { group2Index = i; }
-		}
-		
-		numGroupComb = 0;
-		int n = 1;
-		for (int i = 0; i < (numGroups - 1); i++) {
-			for (int l = n; l < numGroups; l++) {
-				if ((group1Index == i) && (group2Index == l)) {
-					pos = numGroupComb;  //pos tells you which column in the output file you are in
-				}else if ((group1Index == l) && (group2Index == i)) {
-					pos = numGroupComb;
-				}
-				numGroupComb++;
-			}
-			n++;
-		}
-			
-		if ((estimate->getMultiple() == true) && all) { 
-			numGroupComb++; 
-			groupData.resize((numGroupComb*data.size()), 0);
-			//is this the time its called with all values
-			if  ((timesCalled % numGroupComb) == 0) { 
-				//last spot
-				pos = ((groupData.size()-1) * data.size());
-			}
-			//fills groupdata with datas info
-			for (int i = 0; i < data.size(); i++) {
-				groupData[pos+i] = data[i];
-			}
-		}else {
-			groupData.resize((numGroupComb*data.size()), 0);
-			//fills groupdata with datas info
-			for (int i = 0; i < data.size(); i++) {
-				groupData[pos+i] = data[i];
-			}
-		}
-		
-		//when you get all your groups info then output
-		if ((timesCalled % numGroupComb) == 0) {
-			output->output(numSeqs, groupData);	
-		}
-	};
-									
-	void init(string s)		{	output->initFile(s);	};
-	void reset()			{	output->resetFile();	};
-	void close()			{	output->resetFile();	};
-	void setAll(bool a)		{	all = a;				}
-	bool getAll()			{	return all;				}
-	
-	
-	bool isCalcMultiple()	{ return estimate->getMultiple(); }
-	bool calcNeedsAll()     { return estimate->getNeedsAll(); }
-	bool hasLciHci()	{
-		if (estimate->getCols() == 3) { return true; } 
-		else{ return false; } 
-	}
-	
-	string getName()	{  return estimate->getName();  }
-	
-	
-private:
-	
-	Calculator* estimate;
-	FileOutput* output;
-	int nSeqs, timesCalled, numGroupComb;
-	vector<double> data;
-	vector<double> groupData;
-	bool all;
-	
-};
-
-/***********************************************************************/
-
-#endif