X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=collectcommand.h;h=1d8734fa5d713ad4535e067af55d3c56d699573c;hb=f06b339c5fc4b6d1b9d2a08fe16bf7670bf7aeb4;hp=d250126551f88a74bcdc7afebde65763e424aab7;hpb=e150b0b0664caec517485ee6d69dcdade6dcae77;p=mothur.git

diff --git a/collectcommand.h b/collectcommand.h
index d250126..1d8734f 100644
--- a/collectcommand.h
+++ b/collectcommand.h
@@ -37,8 +37,10 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "collect.single";			}
 	string getCommandCategory()		{ return "OTU-Based Approaches";	}
-	string getCitation() { return "http://www.mothur.org/wiki/Collect.single"; }
+	string getCitation() { return "Schloss PD, Handelsman J (2006). Introducing SONS, A tool that compares the membership of microbial communities. Appl Environ Microbiol 72: 6773-9. \nhttp://www.mothur.org/wiki/Collect.single"; }
+	string getOutputFileNameTag(string, string);
 	string getHelpString();	
+	string getDescription()		{ return "generates collector's curves using calculators, that describe the richness, diversity, and other features of individual samples"; }
 	
 	int execute(); 
 	void help() { m->mothurOut(getHelpString()); }