X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=collectcommand.cpp;h=b892a91bee89e9b6d01ac7bda8e40833fd4db3b0;hb=1a968f34ae2d2680eaf189a197d1a21b8dfd6c03;hp=de92e494ac7565953716e1ab413ffc13ee829913;hpb=1a5c2356c1b955c6ec024b2baf9f46377ee7c72e;p=mothur.git diff --git a/collectcommand.cpp b/collectcommand.cpp index de92e49..b892a91 100644 --- a/collectcommand.cpp +++ b/collectcommand.cpp @@ -67,8 +67,8 @@ string CollectCommand::getHelpString(){ helpString += "The collect.single command parameters are list, sabund, rabund, shared, label, freq, calc and abund. list, sabund, rabund or shared is required unless you have a valid current file. \n"; helpString += "The collect.single command should be in the following format: \n"; helpString += "The freq parameter is used indicate when to output your data, by default it is set to 100. But you can set it to a percentage of the number of sequence. For example freq=0.10, means 10%. \n"; - helpString += "collect.single(label=yourLabel, iters=yourIters, freq=yourFreq, calc=yourEstimators).\n"; - helpString += "Example collect(label=unique-.01-.03, iters=10000, freq=10, calc=sobs-chao-ace-jack).\n"; + helpString += "collect.single(label=yourLabel, freq=yourFreq, calc=yourEstimators).\n"; + helpString += "Example collect(label=unique-.01-.03, freq=10, calc=sobs-chao-ace-jack).\n"; helpString += "The default values for freq is 100, and calc are sobs-chao-ace-jack-shannon-npshannon-simpson.\n"; helpString += validCalculator.printCalc("single"); helpString += "The label parameter is used to analyze specific labels in your input.\n";