X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=collectcommand.cpp;h=952131436cdb111a142970f3310b4283a1be7123;hb=e150b0b0664caec517485ee6d69dcdade6dcae77;hp=5549fd121dfca80e5cd4a406084f68803875dc58;hpb=1d898dc6edaf9e9f287fab53bf1f21fb29757a17;p=mothur.git

diff --git a/collectcommand.cpp b/collectcommand.cpp
index 5549fd1..9521314 100644
--- a/collectcommand.cpp
+++ b/collectcommand.cpp
@@ -124,7 +124,8 @@ CollectCommand::CollectCommand(string option)  {
 		allLines = 1;
 		
 		//allow user to run help
-		if(option == "help") { help(); abort = true; }
+		if(option == "help") { help(); calledHelp = true; abort = true; }
+		else if(option == "citation") { citation(); abort = true; calledHelp = true;}
 		
 		else {
 			vector<string> myArray = setParameters();