X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=collectcommand.cpp;h=000f85d1d91f3922766f024d71dc157640b2eabe;hb=9ca2caadbeac83bb84b3330d9204b1b659d62941;hp=95a79d5bc69f763688915ecb998bd47cff162f1e;hpb=42b802c0006d8b13bd5b27ea48d032a85d3f2102;p=mothur.git diff --git a/collectcommand.cpp b/collectcommand.cpp index 95a79d5..000f85d 100644 --- a/collectcommand.cpp +++ b/collectcommand.cpp @@ -10,6 +10,7 @@ #include "collectcommand.h" #include "ace.h" #include "sobs.h" +#include "nseqs.h" #include "chao1.h" #include "bootstrap.h" #include "simpson.h" @@ -35,8 +36,10 @@ CollectCommand::CollectCommand(){ cDisplays.push_back(new CollectDisplay(new Sobs(), new OneColumnFile(fileNameRoot+"sobs"))); }else if (globaldata->Estimators[i] == "chao") { cDisplays.push_back(new CollectDisplay(new Chao1(), new ThreeColumnFile(fileNameRoot+"chao"))); + }else if (globaldata->Estimators[i] == "nseqs") { + cDisplays.push_back(new CollectDisplay(new NSeqs(), new OneColumnFile(fileNameRoot+"nseqs"))); }else if (globaldata->Estimators[i] == "ace") { - convert(globaldata->getAbund(), abund); + convert(globaldata->getAbund(), abund); cDisplays.push_back(new CollectDisplay(new Ace(abund), new ThreeColumnFile(fileNameRoot+"ace"))); }else if (globaldata->Estimators[i] == "jack") { cDisplays.push_back(new CollectDisplay(new Jackknife(), new ThreeColumnFile(fileNameRoot+"jack")));