X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=collectcommand.cpp;fp=collectcommand.cpp;h=7b8364b9b25d07e457508dbe5fe0153a4cc3a27f;hb=8f7f4fc08b8c70d9ef0f79607813dba4e926e102;hp=952131436cdb111a142970f3310b4283a1be7123;hpb=8bcd146863e2a44d6d4fb5dee2d3f17e975deb45;p=mothur.git

diff --git a/collectcommand.cpp b/collectcommand.cpp
index 9521314..7b8364b 100644
--- a/collectcommand.cpp
+++ b/collectcommand.cpp
@@ -272,6 +272,11 @@ CollectCommand::CollectCommand(string option)  {
 				 if (calc == "default")  {  calc = "sobs-chao-ace-jack-shannon-npshannon-simpson";  }
 			}
 			m->splitAtDash(calc, Estimators);
+			if (m->inUsersGroups("citation", Estimators)) { 
+				ValidCalculators validCalc; validCalc.printCitations(Estimators); 
+				//remove citation from list of calcs
+				for (int i = 0; i < Estimators.size(); i++) { if (Estimators[i] == "citation") {  Estimators.erase(Estimators.begin()+i); break; } }
+			}
 
 			string temp;
 			temp = validParameter.validFile(parameters, "freq", false);			if (temp == "not found") { temp = "100"; }