X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=collect.h;h=79f88fb6dc4ea12a886107743fe7fd8a65a539d5;hb=fd5f17bcbe5fadab2c525f3d1fcfd1d79a60ae72;hp=3f6a094e0319092f3c8151408813cd2678468d85;hpb=addc715b6d7ea52440751cec10edad03e1a19b37;p=mothur.git

diff --git a/collect.h b/collect.h
index 3f6a094..79f88fb 100644
--- a/collect.h
+++ b/collect.h
@@ -1,9 +1,6 @@
 #ifndef COLLECT_H
 #define COLLECT_H
 
-using namespace std;
-
-
 #include "collectorscurvedata.h"
 #include "display.h"
 #include "ordervector.hpp"
@@ -12,6 +9,7 @@ using namespace std;
 #include "sharedordervector.h"
 #include "datavector.hpp"
 #include "globaldata.hpp"
+#include "mothurout.h"
 
 /***********************************************************************/
 
@@ -19,13 +17,13 @@ class Collect {
 	
 public:
 	Collect(OrderVector* order, vector<Display*> disp) :
-					numSeqs(order->getNumSeqs()), order(order), displays(disp), label(order->getLabel())  {};
+					numSeqs(order->getNumSeqs()), order(order), displays(disp), label(order->getLabel())  { m = MothurOut::getInstance(); };
 	Collect(SharedOrderVector* sharedorder, vector<Display*> disp) :
-					numSeqs(sharedorder->getNumSeqs()), sharedorder(sharedorder), displays(disp), label(sharedorder->getLabel())  {};
+					numSeqs(sharedorder->getNumSeqs()), sharedorder(sharedorder), displays(disp), label(sharedorder->getLabel())  { m = MothurOut::getInstance(); }
 
 	~Collect(){		};
-	void getCurve(int);
-	void getSharedCurve(int);
+	int getCurve(float);
+	int getSharedCurve(float);
 	
 private:
 	SharedOrderVector* sharedorder;
@@ -34,9 +32,10 @@ private:
 	vector<Display*> displays;
 	int numSeqs, numGroupComb, totalNumSeq;
 	string label, groupLabel;
-	void getGroupComb(vector<string>);
+	void getGroupComb();
 	vector<string> groupComb;
 	bool validGroup(vector<string>, string);
+	MothurOut* m;
 };