X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=code_ruby%2Ftest%2Fmaasha%2Fseq%2Ftest_backtrack.rb;h=1af799e07ad2321bb7f627e8c112398f9c43375a;hb=03e0b2c92f1d3ae6bc396a37398826dc03dca30d;hp=43af1def2702c2997a1aa9a14df6d9f88d4d0786;hpb=5e95615675184f4f73ee15fa1bace9e55426d8ba;p=biopieces.git

diff --git a/code_ruby/test/maasha/seq/test_backtrack.rb b/code_ruby/test/maasha/seq/test_backtrack.rb
index 43af1de..1af799e 100644
--- a/code_ruby/test/maasha/seq/test_backtrack.rb
+++ b/code_ruby/test/maasha/seq/test_backtrack.rb
@@ -27,6 +27,11 @@ $:.unshift File.join(File.dirname(__FILE__),'..','lib')
 
 require 'test/unit'
 require 'maasha/seq'
+require 'maasha/seq/backtrack'
+
+class Seq
+  include BackTrack
+end
 
 class BackTrackTest < Test::Unit::TestCase
   def setup
@@ -96,48 +101,48 @@ class BackTrackTest < Test::Unit::TestCase
   end
 
   def test_BackTrack_patscan_perfect_left_is_ok
-    assert_equal("0:7:0:0:0:tacgatg", @seq.patscan("TACGATG").first.to_s)
+    assert_equal("0:7:tacgatg", @seq.patscan("TACGATG").first.to_s)
   end
 
   def test_BackTrack_patscan_perfect_right_is_ok
-    assert_equal("13:7:0:0:0:tgcacgg", @seq.patscan("TGCACGG").first.to_s)
+    assert_equal("13:7:tgcacgg", @seq.patscan("TGCACGG").first.to_s)
   end
 
   def test_BackTrack_patscan_ambiguity_is_ok
-    assert_equal("13:7:0:0:0:tgcacgg", @seq.patscan("TGCACNN").first.to_s)
+    assert_equal("13:7:tgcacgg", @seq.patscan("TGCACNN").first.to_s)
   end
 
   def test_BackTrack_patscan_pos_is_ok
-    assert_equal("10:1:0:0:0:g", @seq.patscan("N", 10).first.to_s)
-    assert_equal("19:1:0:0:0:g", @seq.patscan("N", 10).last.to_s)
+    assert_equal("10:1:g", @seq.patscan("N", 10).first.to_s)
+    assert_equal("19:1:g", @seq.patscan("N", 10).last.to_s)
   end
 
   def test_BackTrack_patscan_mis_left_is_ok
-    assert_equal("0:7:1:0:0:tacgatg", @seq.patscan("Aacgatg", 0, 1).first.to_s)
+    assert_equal("0:7:tacgatg", @seq.patscan("Aacgatg", 0, 1).first.to_s)
   end
 
   def test_BackTrack_patscan_mis_right_is_ok
-    assert_equal("13:7:1:0:0:tgcacgg", @seq.patscan("tgcacgA", 0, 1).first.to_s)
+    assert_equal("13:7:tgcacgg", @seq.patscan("tgcacgA", 0, 1).first.to_s)
   end
 
   def test_BackTrack_patscan_ins_left_is_ok
-    assert_equal("0:7:0:1:0:tacgatg", @seq.patscan("Atacgatg", 0, 0, 1).first.to_s)
+    assert_equal("0:7:tacgatg", @seq.patscan("Atacgatg", 0, 0, 1).first.to_s)
   end
 
   def test_BackTrack_patscan_ins_right_is_ok
-    assert_equal("13:7:0:1:0:tgcacgg", @seq.patscan("tgcacggA", 0, 0, 1).first.to_s)
+    assert_equal("13:7:tgcacgg", @seq.patscan("tgcacggA", 0, 0, 1).first.to_s)
   end
 
   def test_BackTrack_patscan_del_left_is_ok
-    assert_equal("0:7:0:0:1:tacgatg", @seq.patscan("acgatg", 0, 0, 0, 1).first.to_s)
+    assert_equal("0:7:tacgatg", @seq.patscan("acgatg", 0, 0, 0, 1).first.to_s)
   end
 
   def test_BackTrack_patscan_del_right_is_ok
-    assert_equal("12:8:0:0:1:atgcacgg", @seq.patscan("tgcacgg", 0, 0, 0, 1).first.to_s)
+    assert_equal("12:8:atgcacgg", @seq.patscan("tgcacgg", 0, 0, 0, 1).first.to_s)
   end
 
   def test_BackTrack_patscan_ambiguity_mis_ins_del_all_ok
-    assert_equal("0:20:1:1:1:tacgatgctagcatgcacgg", @seq.patscan("tacatgcNagGatgcCacgg", 0, 1, 1, 1).first.to_s)
+    assert_equal("0:20:tacgatgctagcatgcacgg", @seq.patscan("tacatgcNagGatgcCacgg", 0, 1, 1, 1).first.to_s)
   end
 end