X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=code_ruby%2Ftest%2Fmaasha%2Fseq%2Ftest_assemble.rb;h=e4901b4d2e6a66710e9fb4c5bcf52898fab990f3;hb=bc7b9f68c35624bd8a605e35f9a15dfbf66ae37d;hp=cf05ca839fca4fb8bcdb0521b0d62b4e9eea6b83;hpb=ddbb577ec991c2a466b6c1230cc241f649753f09;p=biopieces.git

diff --git a/code_ruby/test/maasha/seq/test_assemble.rb b/code_ruby/test/maasha/seq/test_assemble.rb
index cf05ca8..e4901b4 100755
--- a/code_ruby/test/maasha/seq/test_assemble.rb
+++ b/code_ruby/test/maasha/seq/test_assemble.rb
@@ -12,19 +12,19 @@ class TestAssemble < Test::Unit::TestCase
   end
 
   test "Assemble.pair with overlap returns the correctly" do
-    assert_equal("atcgatc", Assemble.pair(Seq.new("test1", "atcg"), Seq.new("test2", "gatc")).seq)
-    assert_equal("atcgat",  Assemble.pair(Seq.new("test1", "atcg"), Seq.new("test2", "cgat")).seq)
-    assert_equal("atcga",   Assemble.pair(Seq.new("test1", "atcg"), Seq.new("test2", "tcga")).seq)
+    assert_equal("ATCgATC", Assemble.pair(Seq.new("test1", "atcg"), Seq.new("test2", "gatc")).seq)
+    assert_equal("ATcgAT",  Assemble.pair(Seq.new("test1", "atcg"), Seq.new("test2", "cgat")).seq)
+    assert_equal("AtcgA",   Assemble.pair(Seq.new("test1", "atcg"), Seq.new("test2", "tcga")).seq)
     assert_equal("atcg",    Assemble.pair(Seq.new("test1", "atcg"), Seq.new("test2", "atcg")).seq)
   end
 
   test "Assemble.pair with overlap and overlap_min returns correctly" do
     assert_nil(Assemble.pair(Seq.new("test1", "atcg"), Seq.new("test2", "gatc"), :overlap_min => 2))
-    assert_equal("atcgat", Assemble.pair(Seq.new("test1", "atcg"), Seq.new("test2", "cgat"), :overlap_min => 2).seq)
+    assert_equal("ATcgAT", Assemble.pair(Seq.new("test1", "atcg"), Seq.new("test2", "cgat"), :overlap_min => 2).seq)
   end
 
   test "Assemble.pair with overlap and overlap_max returns correctly" do
-    assert_equal("atcga", Assemble.pair(Seq.new("test1", "atcg"), Seq.new("test2", "tcga"), :overlap_max => 3).seq)
+    assert_equal("AtcgA", Assemble.pair(Seq.new("test1", "atcg"), Seq.new("test2", "tcga"), :overlap_max => 3).seq)
     assert_nil(Assemble.pair(Seq.new("test1", "atcg"), Seq.new("test2", "atcg"), :overlap_max => 3))
   end