X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=code_ruby%2Flib%2Fmaasha%2Fsam.rb;h=8772e6382f20913d2fca3c9076b90475d2824564;hb=a80169a9121e8537f169cd85010d2ceae3a8d4fd;hp=14a910ffd4a46e7cef036a290da040abf0f632b7;hpb=a30677c14f1738f6a76e8c12f2e732cdef9958d6;p=biopieces.git

diff --git a/code_ruby/lib/maasha/sam.rb b/code_ruby/lib/maasha/sam.rb
index 14a910f..8772e63 100644
--- a/code_ruby/lib/maasha/sam.rb
+++ b/code_ruby/lib/maasha/sam.rb
@@ -76,7 +76,7 @@ class Sam < Filesys
     bp[:SEQ]      = sam[:SEQ].seq
 
     unless sam[:SEQ].qual.nil?
-      bp[:SCORES] = sam[:SEQ].convert_phred2illumina!.qual
+      bp[:SCORES] = sam[:SEQ].qual_convert!(:base_33, :base_64).qual
     end
 
     if sam[:NM] and sam[:NM].to_i > 0