X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=clustersplitcommand.h;h=d46bb8ed9be115e229cd1ed0ea39a993aa6f61f0;hb=5a4ac4f954c4b4445bcee272f1f8220ddcc9c1e4;hp=a82d02270ecc37f1c85e93c9fe51b70e29288081;hpb=bdd77df6a7df8a5775b57d0a7ec8b55de45e7b5b;p=mothur.git diff --git a/clustersplitcommand.h b/clustersplitcommand.h index a82d022..d46bb8e 100644 --- a/clustersplitcommand.h +++ b/clustersplitcommand.h @@ -15,7 +15,7 @@ #include "sabundvector.hpp" #include "listvector.hpp" #include "cluster.hpp" -#include "sparsematrix.hpp" +#include "sparsedistancematrix.h" #include "readcluster.h" #include "splitmatrix.h" #include "readphylip.h" @@ -35,6 +35,7 @@ public: vector setParameters(); string getCommandName() { return "cluster.split"; } string getCommandCategory() { return "Clustering"; } + string getOutputFileNameTag(string, string); string getHelpString(); string getCitation() { return "Schloss PD, Westcott SL (2011). Assessing and improving methods used in OTU-based approaches for 16S rRNA gene sequence analysis. Appl Environ Microbiol. \nhttp://www.mothur.org/wiki/Cluster.split"; } string getDescription() { return "splits your sequences by distance or taxonomy then clusters into OTUs"; }